Hb_000976_080

Information

Type -
Description -
Location Contig976: 109105-113304
Sequence    

Annotation

kegg
ID vvi:100244118
description post-GPI attachment to proteins factor 3
nr
ID CAN65586.1
description hypothetical protein VITISV_034376 [Vitis vinifera]
swissprot
ID Q0VFE3
description Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1
trembl
ID A5BF52
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034376 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_080 0.0 - - hypothetical protein VITISV_034376 [Vitis vinifera]
2 Hb_152453_010 0.0656247715 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
3 Hb_005846_020 0.0689875306 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
4 Hb_001001_020 0.0901924492 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
5 Hb_000345_530 0.0903480749 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
6 Hb_005695_060 0.0916644575 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
7 Hb_002783_120 0.094636247 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
8 Hb_005803_010 0.102384173 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001473_080 0.1081865201 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
10 Hb_004920_060 0.1131832382 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
11 Hb_002249_160 0.1145350019 - - -
12 Hb_063409_020 0.116576607 - - Calcium-binding protein, putative [Ricinus communis]
13 Hb_007757_100 0.1196119222 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
14 Hb_000104_080 0.1196608585 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
15 Hb_000453_190 0.1206848926 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
16 Hb_011915_010 0.1211579659 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
17 Hb_000617_220 0.1214935453 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_001160_120 0.1221056899 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001198_150 0.122259583 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
20 Hb_005322_030 0.1228824932 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000976_080 Hb_000976_080 Hb_152453_010 Hb_152453_010 Hb_000976_080--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_000976_080--Hb_005846_020 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_000345_530 Hb_000345_530 Hb_000976_080--Hb_000345_530 Hb_005695_060 Hb_005695_060 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120 Hb_152453_010--Hb_005846_020 Hb_001910_020 Hb_001910_020 Hb_152453_010--Hb_001910_020 Hb_152453_010--Hb_000345_530 Hb_000617_220 Hb_000617_220 Hb_152453_010--Hb_000617_220 Hb_000392_050 Hb_000392_050 Hb_152453_010--Hb_000392_050 Hb_005803_010 Hb_005803_010 Hb_005846_020--Hb_005803_010 Hb_005846_020--Hb_000617_220 Hb_005846_020--Hb_005695_060 Hb_003091_010 Hb_003091_010 Hb_005846_020--Hb_003091_010 Hb_001001_020--Hb_005695_060 Hb_001160_120 Hb_001160_120 Hb_001001_020--Hb_001160_120 Hb_001001_020--Hb_002783_120 Hb_000453_190 Hb_000453_190 Hb_001001_020--Hb_000453_190 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_005695_060--Hb_002783_120 Hb_005695_060--Hb_000453_190 Hb_005695_060--Hb_152453_010 Hb_002783_120--Hb_000453_190 Hb_011915_010 Hb_011915_010 Hb_002783_120--Hb_011915_010 Hb_002783_120--Hb_001160_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.66061 1.67421 3.96382 1.25859 7.9601 6.02844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70703 1.81885 1.26955 1.95381 0.969683

CAGE analysis