Hb_001001_020

Information

Type -
Description -
Location Contig1001: 16762-20957
Sequence    

Annotation

kegg
ID egr:104447919
description 26S proteasome non-ATPase regulatory subunit 14 homolog
nr
ID XP_011030293.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
swissprot
ID Q9LT08
description 26S proteasome non-ATPase regulatory subunit 14 homolog OS=Arabidopsis thaliana GN=RPN11 PE=1 SV=1
trembl
ID B9MVM3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03240g PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00216: 16789-20913
cDNA
(Sanger)
(ID:Location)		 017_P03.ab1: 16789-20055 , 018_P03.ab1: 16791-19771

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_020 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
2 Hb_005695_060 0.0888803121 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
3 Hb_000976_080 0.0901924492 - - hypothetical protein VITISV_034376 [Vitis vinifera]
4 Hb_001160_120 0.0978246298 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002783_120 0.0982312185 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
6 Hb_000453_190 0.1073889724 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
7 Hb_018790_070 0.1094239543 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
8 Hb_005846_020 0.1094883226 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
9 Hb_152453_010 0.1109184611 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
10 Hb_006623_020 0.1123418182 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
11 Hb_005803_010 0.1125029763 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_021422_010 0.1135573704 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
13 Hb_000359_330 0.1144264753 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000345_530 0.1193394716 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
15 Hb_001473_080 0.1198169099 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
16 Hb_001474_030 0.1208356195 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
17 Hb_001754_240 0.1219579721 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
18 Hb_001545_200 0.1228511305 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
19 Hb_002675_040 0.1233481085 - - ran-binding protein, putative [Ricinus communis]
20 Hb_000640_220 0.1234569214 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_020 Hb_001001_020 Hb_005695_060 Hb_005695_060 Hb_001001_020--Hb_005695_060 Hb_000976_080 Hb_000976_080 Hb_001001_020--Hb_000976_080 Hb_001160_120 Hb_001160_120 Hb_001001_020--Hb_001160_120 Hb_002783_120 Hb_002783_120 Hb_001001_020--Hb_002783_120 Hb_000453_190 Hb_000453_190 Hb_001001_020--Hb_000453_190 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070 Hb_005695_060--Hb_002783_120 Hb_005695_060--Hb_000976_080 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_000976_080--Hb_152453_010 Hb_000976_080--Hb_005846_020 Hb_000345_530 Hb_000345_530 Hb_000976_080--Hb_000345_530 Hb_000976_080--Hb_002783_120 Hb_001050_010 Hb_001050_010 Hb_001160_120--Hb_001050_010 Hb_001040_040 Hb_001040_040 Hb_001160_120--Hb_001040_040 Hb_011915_010 Hb_011915_010 Hb_001160_120--Hb_011915_010 Hb_011609_170 Hb_011609_170 Hb_001160_120--Hb_011609_170 Hb_001160_120--Hb_002783_120 Hb_002783_120--Hb_000453_190 Hb_002783_120--Hb_011915_010 Hb_000453_190--Hb_000345_530 Hb_007951_100 Hb_007951_100 Hb_000453_190--Hb_007951_100 Hb_000453_190--Hb_001160_120 Hb_001102_080 Hb_001102_080 Hb_018790_070--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_000480_010 Hb_000480_010 Hb_018790_070--Hb_000480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
373.008 128.56 201.44 71.6267 373.252 202.509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.7191 118.07 80.9949 88.3572 54.2272

CAGE analysis