Hb_002783_120

Information

Type -
Description -
Location Contig2783: 153135-156323
Sequence    

Annotation

kegg
ID rcu:RCOM_1598210
description hypothetical protein
nr
ID XP_012073784.1
description PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08202 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29043: 153049-153280 , PASA_asmbl_29044: 153401-155574 , PASA_asmbl_29045: 155939-156370
cDNA
(Sanger)
(ID:Location)		 002_B09.ab1: 157111-157888 , 052_M21.ab1: 157140-157888

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_120 0.0 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
2 Hb_005695_060 0.0537606888 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
3 Hb_000453_190 0.0615670258 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
4 Hb_000976_080 0.094636247 - - hypothetical protein VITISV_034376 [Vitis vinifera]
5 Hb_001001_020 0.0982312185 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
6 Hb_011915_010 0.1025484056 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
7 Hb_001160_120 0.1039658413 - - conserved hypothetical protein [Ricinus communis]
8 Hb_152453_010 0.104393578 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
9 Hb_001040_040 0.1072813496 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
10 Hb_007951_100 0.107980924 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_005846_020 0.1094414393 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
12 Hb_000923_040 0.1095310444 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
13 Hb_000345_530 0.1095367241 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
14 Hb_003142_070 0.115730702 - - hypothetical protein F383_14657 [Gossypium arboreum]
15 Hb_006452_160 0.1191716147 - - structural constituent of ribosome, putative [Ricinus communis]
16 Hb_004450_060 0.12016063 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
17 Hb_002947_040 0.1204465286 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
18 Hb_030827_030 0.1218404163 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
19 Hb_000104_080 0.1234705747 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
20 Hb_000920_280 0.1235237459 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]

Gene co-expression network

sample Hb_002783_120 Hb_002783_120 Hb_005695_060 Hb_005695_060 Hb_002783_120--Hb_005695_060 Hb_000453_190 Hb_000453_190 Hb_002783_120--Hb_000453_190 Hb_000976_080 Hb_000976_080 Hb_002783_120--Hb_000976_080 Hb_001001_020 Hb_001001_020 Hb_002783_120--Hb_001001_020 Hb_011915_010 Hb_011915_010 Hb_002783_120--Hb_011915_010 Hb_001160_120 Hb_001160_120 Hb_002783_120--Hb_001160_120 Hb_005695_060--Hb_001001_020 Hb_005695_060--Hb_000976_080 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_000345_530 Hb_000345_530 Hb_000453_190--Hb_000345_530 Hb_007951_100 Hb_007951_100 Hb_000453_190--Hb_007951_100 Hb_000453_190--Hb_001160_120 Hb_000453_190--Hb_001001_020 Hb_000976_080--Hb_152453_010 Hb_000976_080--Hb_005846_020 Hb_000976_080--Hb_001001_020 Hb_000976_080--Hb_000345_530 Hb_001001_020--Hb_001160_120 Hb_018790_070 Hb_018790_070 Hb_001001_020--Hb_018790_070 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_001050_010 Hb_001050_010 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_001160_120--Hb_001050_010 Hb_001160_120--Hb_001040_040 Hb_001160_120--Hb_011915_010 Hb_001160_120--Hb_011609_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.3477 19.1202 42.062 6.40044 57.1354 41.5979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.854 14.7898 13.7016 10.8836 11.6147

CAGE analysis