Hb_001198_150

Information

Type -
Description -
Location Contig1198: 122710-128346
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01280g
description POPTRDRAFT_756530; hypothetical protein
nr
ID XP_002304063.2
description hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
swissprot
ID Q0WL80
description UDP-glucose:glycoprotein glucosyltransferase OS=Arabidopsis thaliana GN=UGGT PE=1 SV=1
trembl
ID B9GZF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01280g PE=4 SV=2
Gene Ontology
ID GO:0003980
description udp-glucose:glycoprotein glucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001198_150 0.0 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
2 Hb_011915_010 0.0891755095 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
3 Hb_000914_080 0.0944389097 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_001102_080 0.102922537 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
5 Hb_017895_020 0.1071027922 - - Vacuolar protein sorting protein, putative [Ricinus communis]
6 Hb_007044_040 0.1076021739 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
7 Hb_000922_140 0.1093588252 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
8 Hb_000453_140 0.1105595608 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
9 Hb_002888_070 0.1109439459 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
10 Hb_002249_160 0.1119949021 - - -
11 Hb_002918_060 0.1139195389 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
12 Hb_001427_190 0.1158697039 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
13 Hb_002093_030 0.1176654988 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
14 Hb_006658_040 0.119201197 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
15 Hb_002675_040 0.1193817185 - - ran-binding protein, putative [Ricinus communis]
16 Hb_001501_060 0.1193920288 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002307_350 0.1196459752 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_007456_010 0.1201135932 - - hypothetical protein L484_003540 [Morus notabilis]
19 Hb_008103_080 0.1206801586 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
20 Hb_008725_130 0.120925868 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001198_150 Hb_001198_150 Hb_011915_010 Hb_011915_010 Hb_001198_150--Hb_011915_010 Hb_000914_080 Hb_000914_080 Hb_001198_150--Hb_000914_080 Hb_001102_080 Hb_001102_080 Hb_001198_150--Hb_001102_080 Hb_017895_020 Hb_017895_020 Hb_001198_150--Hb_017895_020 Hb_007044_040 Hb_007044_040 Hb_001198_150--Hb_007044_040 Hb_000922_140 Hb_000922_140 Hb_001198_150--Hb_000922_140 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_001050_010 Hb_001050_010 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_011915_010--Hb_007044_040 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000329_130 Hb_000329_130 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_009151_020 Hb_009151_020 Hb_000914_080--Hb_009151_020 Hb_000914_080--Hb_017895_020 Hb_005408_020 Hb_005408_020 Hb_000914_080--Hb_005408_020 Hb_000480_010 Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_001102_080--Hb_002888_070 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_017895_020--Hb_000329_130 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_007044_040--Hb_003126_100 Hb_002093_030 Hb_002093_030 Hb_007044_040--Hb_002093_030 Hb_007044_040--Hb_000480_010 Hb_007044_040--Hb_002888_070 Hb_001953_150 Hb_001953_150 Hb_000922_140--Hb_001953_150 Hb_005332_020 Hb_005332_020 Hb_000922_140--Hb_005332_020 Hb_006658_040 Hb_006658_040 Hb_000922_140--Hb_006658_040 Hb_004429_160 Hb_004429_160 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_001307_080 Hb_001307_080 Hb_000922_140--Hb_001307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.520483 0.178228 0.332642 0.105052 0.631781 0.430072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17465 0.0915642 0.08361 0.295434 0.185725

CAGE analysis