Hb_000914_080

Information

Type -
Description -
Location Contig914: 84573-86956
Sequence    

Annotation

kegg
ID rcu:RCOM_1577330
description ubiquitin-protein ligase, putative
nr
ID XP_002513467.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9LXR6
description Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=3 SV=1
trembl
ID B9RI98
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1577330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62182: 84708-86995 , PASA_asmbl_62183: 85841-86505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_080 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_002888_070 0.0681274696 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
3 Hb_000329_130 0.0682201994 - - beta-tubulin cofactor d, putative [Ricinus communis]
4 Hb_003126_100 0.0684838209 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
5 Hb_009151_020 0.0692994315 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
6 Hb_017895_020 0.0741723062 - - Vacuolar protein sorting protein, putative [Ricinus communis]
7 Hb_005408_020 0.0754654076 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000347_570 0.0757013453 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
9 Hb_001307_080 0.0757943805 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
10 Hb_002301_270 0.0832602211 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
11 Hb_000640_220 0.0833406149 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
12 Hb_067193_010 0.0855198533 - - -
13 Hb_002093_030 0.0859158374 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
14 Hb_005539_190 0.0859580807 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
15 Hb_005892_030 0.0865523125 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
16 Hb_011930_080 0.0866390601 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
17 Hb_002307_350 0.0867000735 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_002749_110 0.0876585814 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
19 Hb_000025_650 0.087975449 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
20 Hb_001102_080 0.0883292695 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000914_080 Hb_000914_080 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000329_130 Hb_000329_130 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_009151_020 Hb_009151_020 Hb_000914_080--Hb_009151_020 Hb_017895_020 Hb_017895_020 Hb_000914_080--Hb_017895_020 Hb_005408_020 Hb_005408_020 Hb_000914_080--Hb_005408_020 Hb_000868_060 Hb_000868_060 Hb_002888_070--Hb_000868_060 Hb_002888_070--Hb_003126_100 Hb_000480_010 Hb_000480_010 Hb_002888_070--Hb_000480_010 Hb_001102_080 Hb_001102_080 Hb_002888_070--Hb_001102_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_000329_130--Hb_009151_020 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_005408_020--Hb_008725_130 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3788 8.11834 8.59954 5.62985 20.2831 15.0851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04837 4.50546 4.00687 7.94051 5.51347

CAGE analysis