Hb_000347_570

Information

Type -
Description -
Location Contig347: 504473-508197
Sequence    

Annotation

kegg
ID rcu:RCOM_0653050
description protein with unknown function
nr
ID XP_012068890.1
description PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
swissprot
ID B2C6R6
description Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana GN=TAF12B PE=1 SV=1
trembl
ID A0A067L9H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24708 PE=4 SV=1
Gene Ontology
ID GO:0005669
description transcription initiation factor tfiid subunit 12b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_570 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
2 Hb_001178_150 0.0551107487 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
3 Hb_009151_020 0.0552890795 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
4 Hb_001473_090 0.0672177483 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
5 Hb_020665_030 0.067452234 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000025_650 0.0710827848 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
7 Hb_001417_050 0.0720112859 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
8 Hb_000329_130 0.0733438411 - - beta-tubulin cofactor d, putative [Ricinus communis]
9 Hb_000914_080 0.0757013453 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_002301_270 0.0760705372 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
11 Hb_000935_090 0.0791712289 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
12 Hb_002422_050 0.07973013 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
13 Hb_005892_030 0.0801041673 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
14 Hb_017895_020 0.0811684224 - - Vacuolar protein sorting protein, putative [Ricinus communis]
15 Hb_022693_030 0.0836963873 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
16 Hb_003029_130 0.0838650191 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
17 Hb_004970_160 0.0843122868 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
18 Hb_000714_050 0.0845527086 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
19 Hb_001028_070 0.0846388617 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
20 Hb_002411_120 0.0869552086 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_570 Hb_000347_570 Hb_001178_150 Hb_001178_150 Hb_000347_570--Hb_001178_150 Hb_009151_020 Hb_009151_020 Hb_000347_570--Hb_009151_020 Hb_001473_090 Hb_001473_090 Hb_000347_570--Hb_001473_090 Hb_020665_030 Hb_020665_030 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_001473_090 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_020665_030--Hb_000329_130 Hb_000714_050 Hb_000714_050 Hb_020665_030--Hb_000714_050 Hb_003847_120 Hb_003847_120 Hb_020665_030--Hb_003847_120 Hb_000320_200 Hb_000320_200 Hb_020665_030--Hb_000320_200 Hb_000025_650--Hb_000935_090 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_004429_160 Hb_004429_160 Hb_000025_650--Hb_004429_160 Hb_001493_040 Hb_001493_040 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_001417_050--Hb_000796_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2678 10.8166 7.17159 5.66994 20.0103 20.2451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20754 5.07469 3.68722 7.47932 8.64705

CAGE analysis