Hb_000120_620

Information

Type -
Description -
Location Contig120: 479106-485687
Sequence    

Annotation

kegg
ID rcu:RCOM_0875020
description kinase, putative (EC:2.7.11.1)
nr
ID XP_012065416.1
description PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
swissprot
ID Q9C5S2
description Serine/threonine-protein kinase/endoribonuclease IRE1a OS=Arabidopsis thaliana GN=IRE1A PE=1 SV=1
trembl
ID A0A067L997
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22410 PE=4 SV=1
Gene Ontology
ID GO:0004540
description serine threonine-protein kinase endoribonuclease ire1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06164: 479114-485737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_620 0.0 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
2 Hb_004899_070 0.0558080191 - - PREDICTED: RRP12-like protein [Jatropha curcas]
3 Hb_004970_160 0.0566685473 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
4 Hb_000098_130 0.0581338839 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
5 Hb_003097_180 0.0589180194 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
6 Hb_000261_290 0.059947584 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
7 Hb_001178_150 0.0685137258 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
8 Hb_017895_020 0.0780031883 - - Vacuolar protein sorting protein, putative [Ricinus communis]
9 Hb_006588_050 0.078643606 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
10 Hb_000329_130 0.0794302064 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_001492_010 0.0814627963 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
12 Hb_140049_020 0.081661759 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
13 Hb_005462_020 0.0823524678 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
14 Hb_008725_130 0.0830272395 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
15 Hb_001454_320 0.0844134055 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
16 Hb_000313_340 0.0845673292 - - DNA repair protein xp-E, putative [Ricinus communis]
17 Hb_000594_020 0.0853827582 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
18 Hb_004429_160 0.0857273595 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
19 Hb_003529_130 0.0863890716 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
20 Hb_000300_360 0.0864667428 - - PREDICTED: exosome component 10 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_620 Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000098_130 Hb_000098_130 Hb_000120_620--Hb_000098_130 Hb_003097_180 Hb_003097_180 Hb_000120_620--Hb_003097_180 Hb_000261_290 Hb_000261_290 Hb_000120_620--Hb_000261_290 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_004899_070--Hb_000098_130 Hb_004899_070--Hb_000261_290 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_000098_130--Hb_000261_290 Hb_000098_130--Hb_003097_180 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000098_130--Hb_000300_360 Hb_003097_180--Hb_000261_290 Hb_003097_180--Hb_004899_070 Hb_006588_050 Hb_006588_050 Hb_003097_180--Hb_006588_050 Hb_003097_180--Hb_001178_150 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_000261_290--Hb_006588_050 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001473_090 Hb_001473_090 Hb_001178_150--Hb_001473_090 Hb_009151_020 Hb_009151_020 Hb_001178_150--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.9078 42.6569 25.4045 17.5501 54.0628 59.6366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2737 8.01047 11.0261 27.3987 15.5286

CAGE analysis