Hb_000640_200

Information

Type -
Description -
Location Contig640: 169793-178280
Sequence    

Annotation

kegg
ID rcu:RCOM_1346600
description hypothetical protein
nr
ID XP_002515267.1
description hypothetical protein RCOM_1346600 [Ricinus communis]
swissprot
ID O22907
description DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2
trembl
ID B9RNC8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346600 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52107: 169852-178249 , PASA_asmbl_52108: 176465-176693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_200 0.0 - - hypothetical protein RCOM_1346600 [Ricinus communis]
2 Hb_004899_070 0.063497413 - - PREDICTED: RRP12-like protein [Jatropha curcas]
3 Hb_006501_020 0.0672455699 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
4 Hb_057451_010 0.0688213119 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
5 Hb_006588_050 0.0806372786 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
6 Hb_000813_100 0.0811295833 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
7 Hb_031069_020 0.081169712 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
8 Hb_007904_180 0.0833046018 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
9 Hb_004970_160 0.0848027315 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
10 Hb_000313_340 0.0857418177 - - DNA repair protein xp-E, putative [Ricinus communis]
11 Hb_003710_040 0.0858624384 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
12 Hb_001811_120 0.0865913263 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
13 Hb_006816_300 0.0879871107 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
14 Hb_003866_020 0.0894235203 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000261_290 0.0898620222 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
16 Hb_000108_080 0.0908049096 - - PREDICTED: importin-5 [Jatropha curcas]
17 Hb_000475_020 0.0917569127 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
18 Hb_001221_160 0.0919028419 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_001080_270 0.0936094636 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
20 Hb_002066_080 0.0936537135 - - PREDICTED: protein CYPRO4 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_200 Hb_000640_200 Hb_004899_070 Hb_004899_070 Hb_000640_200--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_057451_010 Hb_057451_010 Hb_000640_200--Hb_057451_010 Hb_006588_050 Hb_006588_050 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_031069_020 Hb_031069_020 Hb_000640_200--Hb_031069_020 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_004899_070--Hb_000813_100 Hb_006501_020--Hb_006588_050 Hb_003157_010 Hb_003157_010 Hb_006501_020--Hb_003157_010 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_006501_020--Hb_004899_070 Hb_009028_030 Hb_009028_030 Hb_057451_010--Hb_009028_030 Hb_057451_010--Hb_003157_010 Hb_003710_040 Hb_003710_040 Hb_057451_010--Hb_003710_040 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_006588_050--Hb_000261_290 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_000594_020 Hb_000594_020 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_031069_020--Hb_006588_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.1324 60.6422 14.2085 19.4017 71.4104 80.0617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2691 8.85856 16.1082 25.8459 20.8683

CAGE analysis