Hb_001901_080

Information

Type -
Description -
Location Contig1901: 79501-89276
Sequence    

Annotation

kegg
ID rcu:RCOM_0077940
description Xylose isomerase, putative (EC:5.3.1.5)
nr
ID XP_012065287.1
description PREDICTED: xylose isomerase [Jatropha curcas]
swissprot
ID Q9FKK7
description Xylose isomerase OS=Arabidopsis thaliana GN=XYLA PE=2 SV=2
trembl
ID A0A067L5S0
description Xylose isomerase OS=Jatropha curcas GN=JCGZ_23014 PE=3 SV=1
Gene Ontology
ID GO:0005774
description xylose isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18954: 79506-89246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001901_080 0.0 - - PREDICTED: xylose isomerase [Jatropha curcas]
2 Hb_031069_020 0.0761380252 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
3 Hb_078477_040 0.0787655652 - - nuclear movement protein nudc, putative [Ricinus communis]
4 Hb_001731_020 0.0886846645 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
5 Hb_001489_070 0.0914954238 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
6 Hb_006882_010 0.0926716488 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
7 Hb_006002_030 0.1032921058 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
8 Hb_005462_020 0.1061220105 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
9 Hb_000108_080 0.1094690184 - - PREDICTED: importin-5 [Jatropha curcas]
10 Hb_000613_100 0.1103110956 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
11 Hb_022250_110 0.1127564046 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
12 Hb_004920_060 0.1142926411 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
13 Hb_000213_070 0.1146451595 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
14 Hb_001278_060 0.1148477474 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_007668_020 0.1197845568 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
16 Hb_000029_320 0.1198733942 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
17 Hb_000027_030 0.1232572622 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_002307_350 0.1233007112 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_000329_490 0.1244223775 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
20 Hb_004376_030 0.1254302583 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_001901_080 Hb_001901_080 Hb_031069_020 Hb_031069_020 Hb_001901_080--Hb_031069_020 Hb_078477_040 Hb_078477_040 Hb_001901_080--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001901_080--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_001901_080--Hb_001489_070 Hb_006882_010 Hb_006882_010 Hb_001901_080--Hb_006882_010 Hb_006002_030 Hb_006002_030 Hb_001901_080--Hb_006002_030 Hb_031069_020--Hb_078477_040 Hb_031069_020--Hb_001731_020 Hb_000640_200 Hb_000640_200 Hb_031069_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_001731_020--Hb_001489_070 Hb_001731_020--Hb_078477_040 Hb_004920_060 Hb_004920_060 Hb_001731_020--Hb_004920_060 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_001731_020--Hb_006588_050 Hb_001489_070--Hb_006002_030 Hb_001489_070--Hb_005462_020 Hb_001489_070--Hb_004920_060 Hb_008725_130 Hb_008725_130 Hb_001489_070--Hb_008725_130 Hb_006882_010--Hb_078477_040 Hb_000329_490 Hb_000329_490 Hb_006882_010--Hb_000329_490 Hb_006882_010--Hb_022250_110 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_006002_030--Hb_001278_060 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
168.006 122.305 53.0034 89.1604 312.133 289.013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.3128 19.5831 28.8812 69.4527 39.6573

CAGE analysis