Hb_031069_020

Information

Type -
Description -
Location Contig31069: 6120-18502
Sequence    

Annotation

kegg
ID rcu:RCOM_1758470
description strictosidine synthase, putative (EC:4.3.3.2)
nr
ID XP_012066370.1
description PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
swissprot
ID Q8VWF6
description Protein STRICTOSIDINE SYNTHASE-LIKE 3 OS=Arabidopsis thaliana GN=SSL3 PE=2 SV=1
trembl
ID A0A067L3G4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23914 PE=4 SV=1
Gene Ontology
ID GO:0016844
description strictosidine synthase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32913: 6075-18440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031069_020 0.0 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
2 Hb_078477_040 0.0756973134 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_001901_080 0.0761380252 - - PREDICTED: xylose isomerase [Jatropha curcas]
4 Hb_001731_020 0.0788440922 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
5 Hb_000640_200 0.081169712 - - hypothetical protein RCOM_1346600 [Ricinus communis]
6 Hb_006588_050 0.0854561829 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
7 Hb_006501_020 0.087741888 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
8 Hb_000108_080 0.0882839787 - - PREDICTED: importin-5 [Jatropha curcas]
9 Hb_001196_060 0.0934903733 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
10 Hb_005462_020 0.0940040501 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
11 Hb_006882_010 0.0975849175 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
12 Hb_007348_030 0.1044918552 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
13 Hb_001278_060 0.1049552667 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_006002_030 0.1049808036 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
15 Hb_007904_180 0.106319792 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
16 Hb_006816_410 0.1071271259 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
17 Hb_002188_090 0.1077665801 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
18 Hb_004970_160 0.108077654 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
19 Hb_002815_060 0.1081623671 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
20 Hb_006829_090 0.1096694099 - - PREDICTED: protein MOS2 [Jatropha curcas]

Gene co-expression network

sample Hb_031069_020 Hb_031069_020 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_000640_200 Hb_000640_200 Hb_031069_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020 Hb_006002_030 Hb_006002_030 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_001901_080--Hb_078477_040 Hb_001901_080--Hb_001731_020 Hb_001901_080--Hb_001489_070 Hb_006882_010 Hb_006882_010 Hb_001901_080--Hb_006882_010 Hb_001901_080--Hb_006002_030 Hb_001731_020--Hb_001489_070 Hb_001731_020--Hb_078477_040 Hb_004920_060 Hb_004920_060 Hb_001731_020--Hb_004920_060 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_001731_020--Hb_006588_050 Hb_004899_070 Hb_004899_070 Hb_000640_200--Hb_004899_070 Hb_000640_200--Hb_006501_020 Hb_057451_010 Hb_057451_010 Hb_000640_200--Hb_057451_010 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_006588_050--Hb_000261_290 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_000120_620 Hb_000120_620 Hb_006588_050--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_006588_050--Hb_003097_180 Hb_006501_020--Hb_006588_050 Hb_003157_010 Hb_003157_010 Hb_006501_020--Hb_003157_010 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_006501_020--Hb_004899_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
169.089 127.3 42.8589 57.3958 227.795 275.985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9985 14.0866 32.1833 71.0038 51.1292

CAGE analysis