Hb_001731_020

Information

Type -
Description -
Location Contig1731: 6483-12565
Sequence    

Annotation

kegg
ID vvi:100264926
description T-complex protein 1 subunit gamma
nr
ID XP_012070504.1
description PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
swissprot
ID Q84WV1
description T-complex protein 1 subunit gamma OS=Arabidopsis thaliana GN=CCT3 PE=1 SV=1
trembl
ID A0A067L6R0
description T-complex protein 1 subunit gamma OS=Jatropha curcas GN=JCGZ_02769 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16489: 6518-12482
cDNA
(Sanger)
(ID:Location)		 049_J01.ab1: 6520-10509

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001731_020 0.0 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
2 Hb_031069_020 0.0788440922 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
3 Hb_001489_070 0.0804867032 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
4 Hb_078477_040 0.0847648348 - - nuclear movement protein nudc, putative [Ricinus communis]
5 Hb_004920_060 0.0854914333 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
6 Hb_000261_290 0.0857403431 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
7 Hb_006588_050 0.0861813705 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
8 Hb_001901_080 0.0886846645 - - PREDICTED: xylose isomerase [Jatropha curcas]
9 Hb_005462_020 0.0903044356 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
10 Hb_000120_620 0.0933298911 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
11 Hb_000213_070 0.094920041 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
12 Hb_000021_020 0.1008196829 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
13 Hb_002307_350 0.1013582743 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_003097_180 0.1029308731 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
15 Hb_008725_130 0.1031466885 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
16 Hb_004970_160 0.1039406724 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
17 Hb_002815_060 0.1054901742 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
18 Hb_001278_060 0.1058217884 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_006002_030 0.1087392103 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
20 Hb_003436_050 0.1107175646 - - arf gtpase-activating protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001731_020 Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_001731_020--Hb_031069_020 Hb_001489_070 Hb_001489_070 Hb_001731_020--Hb_001489_070 Hb_078477_040 Hb_078477_040 Hb_001731_020--Hb_078477_040 Hb_004920_060 Hb_004920_060 Hb_001731_020--Hb_004920_060 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_001731_020--Hb_006588_050 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_000640_200 Hb_000640_200 Hb_031069_020--Hb_000640_200 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020 Hb_001489_070--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_001489_070--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_001489_070--Hb_005462_020 Hb_001489_070--Hb_004920_060 Hb_008725_130 Hb_008725_130 Hb_001489_070--Hb_008725_130 Hb_078477_040--Hb_006002_030 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_004920_060--Hb_078477_040 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_000098_130 Hb_000098_130 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_000261_290--Hb_006588_050 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_006588_050--Hb_000120_620 Hb_006588_050--Hb_003097_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.355 77.2717 51.3516 50.999 146.179 175.723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6516 11.9135 19.4105 60.1216 24.0024

CAGE analysis