Hb_004376_030

Information

Type transcription factor
Description TF Family: mTERF
Location Contig4376: 57073-71939
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G060900g
description hypothetical protein
nr
ID XP_007149323.1
description hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
swissprot
ID Q54WR5
description Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1
trembl
ID V7BTJ2
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G060900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42544: 56961-57696 , PASA_asmbl_42545: 57891-58153 , PASA_asmbl_42546: 58183-58454 , PASA_asmbl_42547: 68974-69412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004376_030 0.0 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
2 Hb_005408_020 0.0844699359 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000914_080 0.0887456533 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_004920_060 0.0891135664 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
5 Hb_000261_520 0.0955737751 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
6 Hb_000640_220 0.0966734302 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
7 Hb_078477_040 0.1031040466 - - nuclear movement protein nudc, putative [Ricinus communis]
8 Hb_005462_020 0.1040717908 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
9 Hb_002307_350 0.1041836119 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_002249_160 0.1042521535 - - -
11 Hb_000375_030 0.1054732744 - - -
12 Hb_004899_030 0.1055736953 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
13 Hb_028707_090 0.1090273964 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
14 Hb_009151_020 0.11014137 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
15 Hb_000640_020 0.1107035483 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_003436_050 0.1118493302 - - arf gtpase-activating protein, putative [Ricinus communis]
17 Hb_017895_020 0.1122206469 - - Vacuolar protein sorting protein, putative [Ricinus communis]
18 Hb_002301_270 0.1123134898 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_001489_070 0.1126644462 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
20 Hb_001473_080 0.1141352439 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004376_030 Hb_004376_030 Hb_005408_020 Hb_005408_020 Hb_004376_030--Hb_005408_020 Hb_000914_080 Hb_000914_080 Hb_004376_030--Hb_000914_080 Hb_004920_060 Hb_004920_060 Hb_004376_030--Hb_004920_060 Hb_000261_520 Hb_000261_520 Hb_004376_030--Hb_000261_520 Hb_000640_220 Hb_000640_220 Hb_004376_030--Hb_000640_220 Hb_078477_040 Hb_078477_040 Hb_004376_030--Hb_078477_040 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000329_130 Hb_000329_130 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_000914_080--Hb_009151_020 Hb_017895_020 Hb_017895_020 Hb_000914_080--Hb_017895_020 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_000375_030 Hb_000375_030 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000261_520--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000261_520--Hb_005895_040 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_002477_130 Hb_002477_130 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000365_140 Hb_000365_140 Hb_000640_220--Hb_000365_140 Hb_000640_220--Hb_003126_100 Hb_006002_030 Hb_006002_030 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.34635 3.50263 3.61049 3.15605 12.4188 8.02645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66826 2.0718 1.39524 2.52887 2.21407

CAGE analysis