Hb_000261_520

Information

Type -
Description -
Location Contig261: 516903-521624
Sequence    

Annotation

kegg
ID rcu:RCOM_1020320
description PMP, putative
nr
ID XP_012071163.1
description PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01140 PE=4 SV=1
Gene Ontology
ID GO:0012505
description putative type 1 membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27326: 516958-521615 , PASA_asmbl_27327: 518848-519119
cDNA
(Sanger)
(ID:Location)		 022_G17.ab1: 516960-518344 , 022_H06.ab1: 516960-518814 , 037_L12.ab1: 516958-519463 , 049_N21.ab1: 516963-518533 , 050_K14.ab1: 516961-518750

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_520 0.0 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
2 Hb_000755_080 0.0671140638 - - hypothetical protein RCOM_1016710 [Ricinus communis]
3 Hb_000375_030 0.0757610945 - - -
4 Hb_091384_010 0.0858548493 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
5 Hb_000640_220 0.0886596546 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
6 Hb_005895_040 0.0894277874 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
7 Hb_004376_030 0.0955737751 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
8 Hb_004656_060 0.098633784 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_000613_100 0.1029010655 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
10 Hb_000365_140 0.1058258431 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
11 Hb_000037_110 0.108781548 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
12 Hb_000422_140 0.1103198044 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
13 Hb_000940_040 0.1107462477 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
14 Hb_002477_130 0.1108372875 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005408_020 0.1112154816 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022250_110 0.1115050876 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
17 Hb_001584_290 0.1118830756 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_001279_330 0.1151129142 - - Protein bem46, putative [Ricinus communis]
19 Hb_030827_030 0.1151207759 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
20 Hb_004701_030 0.1151333967 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]

Gene co-expression network

sample Hb_000261_520 Hb_000261_520 Hb_000755_080 Hb_000755_080 Hb_000261_520--Hb_000755_080 Hb_000375_030 Hb_000375_030 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000640_220 Hb_000640_220 Hb_000261_520--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000755_080--Hb_000375_030 Hb_000755_080--Hb_000640_220 Hb_000375_030--Hb_000640_220 Hb_000375_030--Hb_005895_040 Hb_005408_020 Hb_005408_020 Hb_000375_030--Hb_005408_020 Hb_002477_130 Hb_002477_130 Hb_000375_030--Hb_002477_130 Hb_009151_020 Hb_009151_020 Hb_000375_030--Hb_009151_020 Hb_091384_010--Hb_000640_220 Hb_002273_130 Hb_002273_130 Hb_091384_010--Hb_002273_130 Hb_091384_010--Hb_005895_040 Hb_001341_120 Hb_001341_120 Hb_091384_010--Hb_001341_120 Hb_000358_250 Hb_000358_250 Hb_091384_010--Hb_000358_250 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_000422_140 Hb_000422_140 Hb_005895_040--Hb_000422_140 Hb_005895_040--Hb_009151_020 Hb_005895_040--Hb_002477_130 Hb_005895_040--Hb_004656_060 Hb_004701_030 Hb_004701_030 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_004376_030--Hb_005408_020 Hb_000914_080 Hb_000914_080 Hb_004376_030--Hb_000914_080 Hb_004920_060 Hb_004920_060 Hb_004376_030--Hb_004920_060 Hb_004376_030--Hb_000640_220 Hb_078477_040 Hb_078477_040 Hb_004376_030--Hb_078477_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
145.522 77.2716 78.3038 90.5931 360.219 241.437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.1483 63.027 65.5523 58.7203 46.3777

CAGE analysis