Hb_005408_020

Information

Type -
Description -
Location Contig5408: 12502-16781
Sequence    

Annotation

kegg
ID rcu:RCOM_0376710
description hypothetical protein
nr
ID XP_002532862.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3P3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0376710 PE=4 SV=1
Gene Ontology
ID GO:0005886
description atp-dependent helicase deoxyribonuclease subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47857: 12554-16780
cDNA
(Sanger)
(ID:Location)		 037_J16.ab1: 12896-16780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002307_350 0.063515994 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
3 Hb_011609_170 0.0692568218 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
4 Hb_000914_080 0.0754654076 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_008725_130 0.0790845009 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
6 Hb_009151_020 0.0818935033 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
7 Hb_030827_030 0.0834763183 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
8 Hb_004376_030 0.0844699359 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
9 Hb_003126_100 0.0848849025 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
10 Hb_002249_160 0.0901075733 - - -
11 Hb_002249_120 0.0905387602 - - RNA-binding protein, putative [Ricinus communis]
12 Hb_017895_020 0.0928057458 - - Vacuolar protein sorting protein, putative [Ricinus communis]
13 Hb_000375_030 0.0937460203 - - -
14 Hb_002888_070 0.0942686146 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
15 Hb_000021_020 0.0947762448 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
16 Hb_000640_220 0.0949496633 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
17 Hb_002301_270 0.0950183231 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
18 Hb_001489_070 0.0966128023 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
19 Hb_000735_100 0.0970336502 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
20 Hb_002681_170 0.0982330356 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]

Gene co-expression network

sample Hb_005408_020 Hb_005408_020 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_002249_120 Hb_002249_120 Hb_002307_350--Hb_002249_120 Hb_002307_350--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_002307_350--Hb_017895_020 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_011609_170--Hb_008725_130 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000329_130 Hb_000329_130 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_000914_080--Hb_009151_020 Hb_000914_080--Hb_017895_020 Hb_008725_130--Hb_017895_020 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_001900_120 Hb_001900_120 Hb_008725_130--Hb_001900_120 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_009151_020--Hb_000329_130 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_030827_030--Hb_003126_100 Hb_001040_040 Hb_001040_040 Hb_030827_030--Hb_001040_040 Hb_000923_040 Hb_000923_040 Hb_030827_030--Hb_000923_040 Hb_000345_530 Hb_000345_530 Hb_030827_030--Hb_000345_530 Hb_000104_080 Hb_000104_080 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.8881 60.5039 76.5985 50.9132 149.231 132.071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4287 25.3952 30.586 35.9172 33.4074

CAGE analysis