Hb_001050_010

Information

Type -
Description -
Location Contig1050: 29583-38839
Sequence    

Annotation

kegg
ID sot:102583916
description uncharacterized LOC102583916
nr
ID KHG14889.1
description Advillin [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NSX3
description Advillin OS=Gossypium arboreum GN=F383_20039 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01699: 29586-38792 , PASA_asmbl_01700: 33269-33513 , PASA_asmbl_01701: 29663-38798 , PASA_asmbl_01702: 30557-30736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001050_010 0.0 - - Advillin [Gossypium arboreum]
2 Hb_000868_060 0.0650220395 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
3 Hb_000002_490 0.0730073272 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
4 Hb_011915_010 0.0747024395 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
5 Hb_001900_120 0.0750106186 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
6 Hb_011609_170 0.0775114929 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_000395_020 0.0789647085 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
8 Hb_001040_040 0.0803791007 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
9 Hb_001102_080 0.0821693561 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
10 Hb_001160_120 0.0833714278 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002888_070 0.0835589223 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
12 Hb_001501_060 0.0857105686 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000480_010 0.0880656799 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002249_160 0.0883146295 - - -
15 Hb_018790_070 0.0885161947 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
16 Hb_008556_030 0.0886554319 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
17 Hb_003858_040 0.0923183901 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
18 Hb_003126_100 0.0957846613 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
19 Hb_002942_050 0.0996863691 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
20 Hb_007044_040 0.1013405695 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]

Gene co-expression network

sample Hb_001050_010 Hb_001050_010 Hb_000868_060 Hb_000868_060 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000868_060--Hb_000395_020 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_011915_010--Hb_001040_040 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_017895_020 Hb_017895_020 Hb_001900_120--Hb_017895_020 Hb_002675_040 Hb_002675_040 Hb_001900_120--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_001900_120--Hb_000329_130 Hb_001900_120--Hb_011609_170 Hb_008725_130 Hb_008725_130 Hb_001900_120--Hb_008725_130 Hb_011609_170--Hb_008725_130 Hb_005408_020 Hb_005408_020 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_011609_170--Hb_000868_060 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_000395_020--Hb_001040_040 Hb_003813_040 Hb_003813_040 Hb_000395_020--Hb_003813_040 Hb_002078_020 Hb_002078_020 Hb_000395_020--Hb_002078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2571 10.4721 16.653 12.1772 25.8443 19.3982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.46899 4.98299 9.32407 10.582 7.14158

CAGE analysis