Hb_002249_160

Information

Type -
Description -
Location Contig2249: 154218-157201
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_160 0.0 - - -
2 Hb_011915_010 0.0753038109 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
3 Hb_030827_030 0.0850954178 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
4 Hb_000345_530 0.085627386 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
5 Hb_001050_010 0.0883146295 - - Advillin [Gossypium arboreum]
6 Hb_005408_020 0.0901075733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003126_100 0.0924534135 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_000914_080 0.0940677259 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_002888_070 0.0955622163 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
10 Hb_001040_040 0.0962235254 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
11 Hb_000480_010 0.0970359042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002249_120 0.1006631274 - - RNA-binding protein, putative [Ricinus communis]
13 Hb_000640_220 0.1011523719 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
14 Hb_000002_490 0.1035584908 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
15 Hb_004376_030 0.1042521535 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
16 Hb_011609_170 0.1059354484 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
17 Hb_000076_260 0.1101718258 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
18 Hb_008725_130 0.1109798293 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
19 Hb_007044_040 0.1115682689 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
20 Hb_001198_150 0.1119949021 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]

Gene co-expression network

sample Hb_002249_160 Hb_002249_160 Hb_011915_010 Hb_011915_010 Hb_002249_160--Hb_011915_010 Hb_030827_030 Hb_030827_030 Hb_002249_160--Hb_030827_030 Hb_000345_530 Hb_000345_530 Hb_002249_160--Hb_000345_530 Hb_001050_010 Hb_001050_010 Hb_002249_160--Hb_001050_010 Hb_005408_020 Hb_005408_020 Hb_002249_160--Hb_005408_020 Hb_003126_100 Hb_003126_100 Hb_002249_160--Hb_003126_100 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_011915_010--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_030827_030--Hb_003126_100 Hb_030827_030--Hb_001040_040 Hb_000923_040 Hb_000923_040 Hb_030827_030--Hb_000923_040 Hb_030827_030--Hb_000345_530 Hb_000104_080 Hb_000104_080 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020 Hb_000345_530--Hb_000923_040 Hb_000345_530--Hb_000104_080 Hb_000345_530--Hb_001040_040 Hb_000976_080 Hb_000976_080 Hb_000345_530--Hb_000976_080 Hb_000868_060 Hb_000868_060 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_005408_020--Hb_011609_170 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_005408_020--Hb_030827_030 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62505 0.543978 1.10266 0.6126 2.3647 1.46631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.456392 0.299011 0.643395 0.631442 0.47563

CAGE analysis