Hb_008725_130

Information

Type -
Description -
Location Contig8725: 81626-90109
Sequence    

Annotation

kegg
ID tcc:TCM_004757
description Importin alpha, ALPHA,AIMP ALPHA isoform 1
nr
ID XP_012082851.1
description PREDICTED: importin subunit alpha-like [Jatropha curcas]
swissprot
ID O22478
description Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2
trembl
ID A0A067JWJ7
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_13993 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61186: 81510-83833 , PASA_asmbl_61187: 81510-83297 , PASA_asmbl_61188: 85479-86347 , PASA_asmbl_61189: 86664-89996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_130 0.0 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
2 Hb_017895_020 0.0567583674 - - Vacuolar protein sorting protein, putative [Ricinus communis]
3 Hb_011609_170 0.0688670271 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
4 Hb_000329_130 0.0723270799 - - beta-tubulin cofactor d, putative [Ricinus communis]
5 Hb_002675_040 0.0735986995 - - ran-binding protein, putative [Ricinus communis]
6 Hb_005408_020 0.0790845009 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001900_120 0.079390485 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
8 Hb_147737_010 0.0822820612 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
9 Hb_000331_190 0.0823797238 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
10 Hb_033594_020 0.0826021397 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
11 Hb_000120_620 0.0830272395 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
12 Hb_125092_020 0.0833800967 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
13 Hb_000120_510 0.0838831311 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
14 Hb_002307_350 0.0838945345 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_000343_210 0.0865027075 - - ran-binding protein, putative [Ricinus communis]
16 Hb_000531_090 0.0869036891 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
17 Hb_004920_060 0.0876371643 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
18 Hb_030827_030 0.0885756934 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
19 Hb_009151_020 0.0894924385 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
20 Hb_001489_070 0.0897918595 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_130 Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_008725_130--Hb_017895_020 Hb_011609_170 Hb_011609_170 Hb_008725_130--Hb_011609_170 Hb_000329_130 Hb_000329_130 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_005408_020 Hb_005408_020 Hb_008725_130--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_008725_130--Hb_001900_120 Hb_017895_020--Hb_002675_040 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_001900_120 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_002675_040--Hb_001900_120 Hb_002675_040--Hb_000329_130 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_005408_020--Hb_000914_080 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_001900_120--Hb_000329_130 Hb_001900_120--Hb_001050_010 Hb_001900_120--Hb_011609_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2541 16.7831 17.2255 9.57021 33.0698 38.6748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8435 5.58134 9.25117 11.8081 8.58037

CAGE analysis