Hb_033594_020

Information

Type -
Description -
Location Contig33594: 5243-9138
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10950g
description POPTRDRAFT_1103930; DNA helicase family protein
nr
ID XP_012079431.1
description PREDICTED: ruvB-like 2 [Jatropha curcas]
swissprot
ID Q9DE27
description RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1
trembl
ID A0A067K7J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12553 PE=4 SV=1
Gene Ontology
ID GO:0005524
description ruvb-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35127: 5232-9044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_020 0.0 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
2 Hb_002675_040 0.0447412082 - - ran-binding protein, putative [Ricinus communis]
3 Hb_046615_020 0.0667299987 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
4 Hb_000343_210 0.0740628668 - - ran-binding protein, putative [Ricinus communis]
5 Hb_007885_070 0.0776826412 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
6 Hb_003656_160 0.0792056486 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
7 Hb_017895_020 0.0793447605 - - Vacuolar protein sorting protein, putative [Ricinus communis]
8 Hb_025477_060 0.080332529 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
9 Hb_001975_020 0.0807468908 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
10 Hb_008725_130 0.0826021397 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
11 Hb_147737_010 0.0847544501 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
12 Hb_000805_260 0.0852215994 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
13 Hb_002043_170 0.0866451414 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
14 Hb_000035_040 0.0866453766 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_000357_080 0.0867028011 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
16 Hb_015026_050 0.0871783963 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_000120_510 0.0874590353 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
18 Hb_001900_120 0.0879649347 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
19 Hb_004128_080 0.0882843419 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
20 Hb_000327_310 0.0893235889 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_033594_020 Hb_033594_020 Hb_002675_040 Hb_002675_040 Hb_033594_020--Hb_002675_040 Hb_046615_020 Hb_046615_020 Hb_033594_020--Hb_046615_020 Hb_000343_210 Hb_000343_210 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_003656_160 Hb_003656_160 Hb_033594_020--Hb_003656_160 Hb_017895_020 Hb_017895_020 Hb_033594_020--Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_002675_040--Hb_000343_210 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_003656_160--Hb_000343_210 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_001900_120 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.1605 23.4979 16.1175 7.49458 46.6971 41.4678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0067 7.42509 15.8648 12.4868 12.3097

CAGE analysis