Hb_000230_370

Information

Type transcription factor
Description TF Family: FAR1
Location Contig230: 344209-347682
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20380g
description POPTRDRAFT_803896; hypothetical protein
nr
ID XP_012069480.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
swissprot
ID Q9M8J3
description Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1
trembl
ID A0A067L6E7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02073 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 7-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24036: 341379-345164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_370 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
2 Hb_046615_020 0.0604295081 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
3 Hb_000327_310 0.0689675859 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
4 Hb_001301_210 0.0745896138 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
5 Hb_002883_010 0.0783921924 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
6 Hb_001975_020 0.0791944203 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
7 Hb_000318_140 0.0793386298 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
8 Hb_003216_110 0.0795461276 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
9 Hb_000317_440 0.0797138332 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
10 Hb_000244_240 0.0801747471 - - ATP binding protein, putative [Ricinus communis]
11 Hb_073171_080 0.0803537219 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
12 Hb_005129_050 0.0812291908 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
13 Hb_153547_010 0.0812872938 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
14 Hb_000035_400 0.0817940848 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
15 Hb_002043_170 0.0820136397 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_000805_310 0.0835979149 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
17 Hb_000291_120 0.0853886204 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
18 Hb_001437_100 0.0858158982 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
19 Hb_018663_020 0.0862090923 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
20 Hb_001226_180 0.086861298 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000230_370 Hb_000230_370 Hb_046615_020 Hb_046615_020 Hb_000230_370--Hb_046615_020 Hb_000327_310 Hb_000327_310 Hb_000230_370--Hb_000327_310 Hb_001301_210 Hb_001301_210 Hb_000230_370--Hb_001301_210 Hb_002883_010 Hb_002883_010 Hb_000230_370--Hb_002883_010 Hb_001975_020 Hb_001975_020 Hb_000230_370--Hb_001975_020 Hb_000318_140 Hb_000318_140 Hb_000230_370--Hb_000318_140 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_000327_310--Hb_001975_020 Hb_004724_360 Hb_004724_360 Hb_000327_310--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_005129_050 Hb_005129_050 Hb_001301_210--Hb_005129_050 Hb_000120_510 Hb_000120_510 Hb_001301_210--Hb_000120_510 Hb_001301_210--Hb_002883_010 Hb_000244_240 Hb_000244_240 Hb_001301_210--Hb_000244_240 Hb_001396_290 Hb_001396_290 Hb_001301_210--Hb_001396_290 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_025557_020 Hb_025557_020 Hb_000318_140--Hb_025557_020 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_018663_020 Hb_018663_020 Hb_000318_140--Hb_018663_020 Hb_000631_150 Hb_000631_150 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5272 11.3241 6.05219 3.43659 25.4539 33.863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3684 5.74806 9.48459 8.75245 6.21662

CAGE analysis