Hb_000035_400

Information

Type -
Description -
Location Contig35: 397428-404788
Sequence    

Annotation

kegg
ID cit:102627004
description lariat debranching enzyme-like
nr
ID XP_006483726.1
description PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
swissprot
ID Q6AU07
description Lariat debranching enzyme OS=Oryza sativa subsp. japonica GN=DBR1 PE=2 SV=1
trembl
ID A0A067KBH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07058 PE=4 SV=1
Gene Ontology
ID GO:0004601
description lariat debranching enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36448: 397515-397767 , PASA_asmbl_36449: 400686-403023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_400 0.0 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
2 Hb_000318_140 0.0714588817 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
3 Hb_007534_040 0.0750091413 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
4 Hb_073171_080 0.0762035569 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
5 Hb_005129_050 0.0782473771 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
6 Hb_000291_120 0.0785331974 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
7 Hb_000230_370 0.0817940848 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_153547_010 0.0854093369 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
9 Hb_005000_270 0.0863156946 - - unnamed protein product [Vitis vinifera]
10 Hb_004724_360 0.0899675805 - - OTU-like cysteine protease family protein [Populus trichocarpa]
11 Hb_001623_550 0.0904900086 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
12 Hb_000372_040 0.0916492162 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001301_210 0.0925524553 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
14 Hb_000805_310 0.0929400606 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
15 Hb_000212_280 0.0953334911 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
16 Hb_018663_020 0.0968536214 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
17 Hb_000134_360 0.097752265 - - PREDICTED: protein gar2 [Jatropha curcas]
18 Hb_025557_020 0.0979273333 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
19 Hb_000209_090 0.0984451578 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_019871_020 0.09848379 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_400 Hb_000035_400 Hb_000318_140 Hb_000318_140 Hb_000035_400--Hb_000318_140 Hb_007534_040 Hb_007534_040 Hb_000035_400--Hb_007534_040 Hb_073171_080 Hb_073171_080 Hb_000035_400--Hb_073171_080 Hb_005129_050 Hb_005129_050 Hb_000035_400--Hb_005129_050 Hb_000291_120 Hb_000291_120 Hb_000035_400--Hb_000291_120 Hb_000230_370 Hb_000230_370 Hb_000035_400--Hb_000230_370 Hb_025557_020 Hb_025557_020 Hb_000318_140--Hb_025557_020 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_018663_020 Hb_018663_020 Hb_000318_140--Hb_018663_020 Hb_000631_150 Hb_000631_150 Hb_000318_140--Hb_000631_150 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_175612_010 Hb_175612_010 Hb_007534_040--Hb_175612_010 Hb_000209_090 Hb_000209_090 Hb_007534_040--Hb_000209_090 Hb_000175_390 Hb_000175_390 Hb_007534_040--Hb_000175_390 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_001754_170 Hb_001754_170 Hb_007534_040--Hb_001754_170 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_004724_360 Hb_004724_360 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_001301_210 Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_001278_060 Hb_001278_060 Hb_005129_050--Hb_001278_060 Hb_002883_010 Hb_002883_010 Hb_005129_050--Hb_002883_010 Hb_001433_190 Hb_001433_190 Hb_005129_050--Hb_001433_190 Hb_007668_020 Hb_007668_020 Hb_005129_050--Hb_007668_020 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070 Hb_004531_090 Hb_004531_090 Hb_000291_120--Hb_004531_090 Hb_004032_350 Hb_004032_350 Hb_000291_120--Hb_004032_350 Hb_000291_120--Hb_073171_080 Hb_000291_120--Hb_004724_360 Hb_000291_120--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_000230_370--Hb_046615_020 Hb_000230_370--Hb_000327_310 Hb_000230_370--Hb_001301_210 Hb_000230_370--Hb_002883_010 Hb_001975_020 Hb_001975_020 Hb_000230_370--Hb_001975_020 Hb_000230_370--Hb_000318_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.263 3.68556 2.22435 1.53001 12.7616 15.7254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76774 4.1757 2.73258 3.10989 2.12051

CAGE analysis