Hb_000291_120

Information

Type transcription factor
Description TF Family: ARF
Location Contig291: 102252-108471
Sequence    

Annotation

kegg
ID rcu:RCOM_1033160
description Auxin response factor, putative
nr
ID XP_012078139.1
description PREDICTED: auxin response factor 17 [Jatropha curcas]
swissprot
ID Q84WU6
description Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1
trembl
ID A0A067KCM5
description Auxin response factor OS=Jatropha curcas GN=JCGZ_12025 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30506: 102441-102606 , PASA_asmbl_30507: 102961-103113 , PASA_asmbl_30508: 105824-108382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_120 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
2 Hb_004531_090 0.0778548541 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
3 Hb_000035_400 0.0785331974 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
4 Hb_004032_350 0.0813039985 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
5 Hb_073171_080 0.082956013 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
6 Hb_004724_360 0.0838229396 - - OTU-like cysteine protease family protein [Populus trichocarpa]
7 Hb_000327_310 0.0844662601 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
8 Hb_000134_360 0.085049075 - - PREDICTED: protein gar2 [Jatropha curcas]
9 Hb_000230_370 0.0853886204 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
10 Hb_009421_030 0.0877156582 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
11 Hb_004128_080 0.0891820784 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
12 Hb_153547_010 0.0902081195 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_000805_310 0.0915697247 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
14 Hb_000152_890 0.0918655225 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
15 Hb_001975_020 0.0929526557 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
16 Hb_008528_010 0.0942404325 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
17 Hb_001486_120 0.0965589521 - - PREDICTED: importin-5-like [Jatropha curcas]
18 Hb_019871_020 0.0978397493 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
19 Hb_000367_290 0.0994843348 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
20 Hb_000165_130 0.1001026794 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]

Gene co-expression network

sample Hb_000291_120 Hb_000291_120 Hb_004531_090 Hb_004531_090 Hb_000291_120--Hb_004531_090 Hb_000035_400 Hb_000035_400 Hb_000291_120--Hb_000035_400 Hb_004032_350 Hb_004032_350 Hb_000291_120--Hb_004032_350 Hb_073171_080 Hb_073171_080 Hb_000291_120--Hb_073171_080 Hb_004724_360 Hb_004724_360 Hb_000291_120--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_000291_120--Hb_000327_310 Hb_000779_040 Hb_000779_040 Hb_004531_090--Hb_000779_040 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_000211_090 Hb_000211_090 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_000318_140 Hb_000318_140 Hb_000035_400--Hb_000318_140 Hb_007534_040 Hb_007534_040 Hb_000035_400--Hb_007534_040 Hb_000035_400--Hb_073171_080 Hb_005129_050 Hb_005129_050 Hb_000035_400--Hb_005129_050 Hb_000230_370 Hb_000230_370 Hb_000035_400--Hb_000230_370 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_004032_350--Hb_001034_020 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_073171_080--Hb_004724_360 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_001975_020 Hb_001975_020 Hb_000327_310--Hb_001975_020 Hb_000327_310--Hb_000230_370 Hb_046615_020 Hb_046615_020 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8607 12.7991 5.24433 3.7033 39.4289 40.644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.366 8.69718 11.5384 5.73173 8.22702

CAGE analysis