Hb_000779_040

Information

Type -
Description -
Location Contig779: 89740-92624
Sequence    

Annotation

kegg
ID rcu:RCOM_0781720
description hypothetical protein
nr
ID XP_012071603.1
description PREDICTED: protein FLX-like 4 [Jatropha curcas]
swissprot
ID Q84TD8
description Protein FLX-like 2 OS=Arabidopsis thaliana GN=FLXL2 PE=1 SV=1
trembl
ID A0A067L3W6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04107 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57878: 89784-92699 , PASA_asmbl_57879: 89784-92693 , PASA_asmbl_57880: 91048-92636 , PASA_asmbl_57881: 91767-92606
cDNA
(Sanger)
(ID:Location)		 002_G15.ab1: 91201-92693

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000779_040 0.0 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
2 Hb_000890_220 0.0437112679 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
3 Hb_000211_090 0.0548801064 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
4 Hb_000608_340 0.0687726218 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
5 Hb_000792_110 0.0697172461 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
6 Hb_004531_090 0.0699493769 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
7 Hb_003673_020 0.0796003929 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
8 Hb_035360_010 0.0840324195 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_002918_070 0.0850393126 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
10 Hb_000185_090 0.086243537 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
11 Hb_101151_020 0.0865794564 - - DNA binding protein, putative [Ricinus communis]
12 Hb_003666_050 0.0871490821 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
13 Hb_012760_200 0.0879604816 - - protein phsophatase-2a, putative [Ricinus communis]
14 Hb_013753_010 0.0905492523 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
15 Hb_019871_020 0.0905544991 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
16 Hb_000016_180 0.0929902299 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
17 Hb_025048_040 0.0932286264 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
18 Hb_002374_150 0.093607279 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
19 Hb_000212_280 0.0944172991 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
20 Hb_000619_070 0.0955486164 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]

Gene co-expression network

sample Hb_000779_040 Hb_000779_040 Hb_000890_220 Hb_000890_220 Hb_000779_040--Hb_000890_220 Hb_000211_090 Hb_000211_090 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000792_110 Hb_000792_110 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_000890_220--Hb_000211_090 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_000890_220--Hb_000792_110 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_012760_200 Hb_012760_200 Hb_000890_220--Hb_012760_200 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_000211_090--Hb_003673_020 Hb_019871_020 Hb_019871_020 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_000792_110--Hb_012760_200 Hb_002025_140 Hb_002025_140 Hb_004531_090--Hb_002025_140 Hb_000291_120 Hb_000291_120 Hb_004531_090--Hb_000291_120 Hb_004531_090--Hb_000211_090 Hb_000573_040 Hb_000573_040 Hb_004531_090--Hb_000573_040 Hb_001034_020 Hb_001034_020 Hb_004531_090--Hb_001034_020 Hb_003673_020--Hb_035360_010 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_003673_020--Hb_000619_070 Hb_003673_020--Hb_003666_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
170.214 50.1976 15.1253 13.2948 201.518 190.6
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3316 20.6965 26.0208 34.484 13.6545

CAGE analysis