Hb_003666_050

Information

Type -
Description -
Location Contig3666: 67535-73261
Sequence    

Annotation

kegg
ID rcu:RCOM_0603710
description hypothetical protein
nr
ID XP_012079127.1
description PREDICTED: NASP-related protein sim3 [Jatropha curcas]
swissprot
ID Q9USQ4
description NASP-related protein sim3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sim3 PE=1 SV=1
trembl
ID A0A067K6V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12298 PE=4 SV=1
Gene Ontology
ID GO:0006306
description protein hgv2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37709: 66743-66976 , PASA_asmbl_37710: 70565-70837 , PASA_asmbl_37711: 72177-73601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003666_050 0.0 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
2 Hb_001195_030 0.0710725073 - - auxilin, putative [Ricinus communis]
3 Hb_000608_340 0.0777931628 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
4 Hb_000211_090 0.07904373 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
5 Hb_000181_310 0.0811228915 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
6 Hb_000185_090 0.0847097702 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
7 Hb_174865_050 0.0855209797 - - PREDICTED: neuroguidin [Jatropha curcas]
8 Hb_000779_040 0.0871490821 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
9 Hb_000573_040 0.0917806582 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
10 Hb_000134_360 0.0934004213 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_004531_090 0.0970258996 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
12 Hb_003580_040 0.0983044059 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
13 Hb_019871_020 0.0984793804 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
14 Hb_003673_020 0.0988118669 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
15 Hb_002025_140 0.1001876654 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_002918_070 0.1033820514 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
17 Hb_000890_220 0.1035372006 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
18 Hb_002374_150 0.104857997 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
19 Hb_000318_140 0.1071771937 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
20 Hb_007757_100 0.1096553456 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003666_050 Hb_003666_050 Hb_001195_030 Hb_001195_030 Hb_003666_050--Hb_001195_030 Hb_000608_340 Hb_000608_340 Hb_003666_050--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_003666_050--Hb_000211_090 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_000185_090 Hb_000185_090 Hb_003666_050--Hb_000185_090 Hb_174865_050 Hb_174865_050 Hb_003666_050--Hb_174865_050 Hb_000540_140 Hb_000540_140 Hb_001195_030--Hb_000540_140 Hb_000684_180 Hb_000684_180 Hb_001195_030--Hb_000684_180 Hb_001195_030--Hb_174865_050 Hb_011644_020 Hb_011644_020 Hb_001195_030--Hb_011644_020 Hb_025557_020 Hb_025557_020 Hb_001195_030--Hb_025557_020 Hb_000779_040 Hb_000779_040 Hb_000608_340--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010 Hb_000211_090--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000890_220 Hb_000890_220 Hb_000211_090--Hb_000890_220 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_007757_100 Hb_007757_100 Hb_000181_310--Hb_007757_100 Hb_003580_040 Hb_003580_040 Hb_000181_310--Hb_003580_040 Hb_000181_310--Hb_000540_140 Hb_004143_070 Hb_004143_070 Hb_000181_310--Hb_004143_070 Hb_009913_050 Hb_009913_050 Hb_000181_310--Hb_009913_050 Hb_113216_010 Hb_113216_010 Hb_000185_090--Hb_113216_010 Hb_000185_090--Hb_000211_090 Hb_000185_090--Hb_000779_040 Hb_000016_180 Hb_000016_180 Hb_000185_090--Hb_000016_180 Hb_000185_090--Hb_019871_020 Hb_000212_280 Hb_000212_280 Hb_174865_050--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_174865_050--Hb_000573_040 Hb_174865_050--Hb_113216_010 Hb_174865_050--Hb_000185_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.2445 15.0752 7.95841 6.68405 94.5045 81.4684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8453 9.83611 10.4799 14.991 11.8659

CAGE analysis