Hb_001195_030

Information

Type -
Description -
Location Contig1195: 17223-23683
Sequence    

Annotation

kegg
ID rcu:RCOM_1595050
description auxilin, putative
nr
ID XP_002510415.1
description auxilin, putative [Ricinus communis]
swissprot
ID Q9FWS1
description Auxilin-like protein 1 OS=Arabidopsis thaliana GN=AUL1 PE=2 SV=2
trembl
ID B9R7X2
description Auxilin, putative OS=Ricinus communis GN=RCOM_1595050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05763: 17481-20493 , PASA_asmbl_05764: 20552-23497 , PASA_asmbl_05765: 23530-23733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_030 0.0 - - auxilin, putative [Ricinus communis]
2 Hb_003666_050 0.0710725073 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
3 Hb_000540_140 0.0855340253 - - zinc binding dehydrogenase, putative [Ricinus communis]
4 Hb_000684_180 0.0855662576 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
5 Hb_174865_050 0.0863024046 - - PREDICTED: neuroguidin [Jatropha curcas]
6 Hb_011644_020 0.0866389304 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
7 Hb_025557_020 0.0990497895 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
8 Hb_000573_040 0.0995396403 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
9 Hb_000181_310 0.1011376047 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
10 Hb_012807_120 0.1020078711 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_000318_140 0.1024804912 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
12 Hb_009615_110 0.105246628 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
13 Hb_002025_140 0.1054506357 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_007111_040 0.1083446306 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
15 Hb_006478_070 0.1098835559 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
16 Hb_000134_360 0.1100025849 - - PREDICTED: protein gar2 [Jatropha curcas]
17 Hb_164010_020 0.1101408431 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
18 Hb_000035_400 0.1114157117 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
19 Hb_000631_150 0.1125421264 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
20 Hb_007757_100 0.1129858391 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_030 Hb_001195_030 Hb_003666_050 Hb_003666_050 Hb_001195_030--Hb_003666_050 Hb_000540_140 Hb_000540_140 Hb_001195_030--Hb_000540_140 Hb_000684_180 Hb_000684_180 Hb_001195_030--Hb_000684_180 Hb_174865_050 Hb_174865_050 Hb_001195_030--Hb_174865_050 Hb_011644_020 Hb_011644_020 Hb_001195_030--Hb_011644_020 Hb_025557_020 Hb_025557_020 Hb_001195_030--Hb_025557_020 Hb_000608_340 Hb_000608_340 Hb_003666_050--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_003666_050--Hb_000211_090 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_000185_090 Hb_000185_090 Hb_003666_050--Hb_000185_090 Hb_003666_050--Hb_174865_050 Hb_000540_140--Hb_011644_020 Hb_000540_140--Hb_000181_310 Hb_000540_140--Hb_025557_020 Hb_007305_010 Hb_007305_010 Hb_000540_140--Hb_007305_010 Hb_003006_060 Hb_003006_060 Hb_000540_140--Hb_003006_060 Hb_000573_040 Hb_000573_040 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000134_360 Hb_000134_360 Hb_000684_180--Hb_000134_360 Hb_000684_180--Hb_011644_020 Hb_000212_280 Hb_000212_280 Hb_174865_050--Hb_000212_280 Hb_174865_050--Hb_000573_040 Hb_113216_010 Hb_113216_010 Hb_174865_050--Hb_113216_010 Hb_174865_050--Hb_000185_090 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_000318_140 Hb_000318_140 Hb_025557_020--Hb_000318_140 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.6291 4.8696 5.8152 3.42402 50.2544 42.6317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6089 8.47776 8.05892 9.41363 5.74285

CAGE analysis