Hb_079326_010

Information

Type -
Description -
Location Contig79326: 3409-6835
Sequence    

Annotation

kegg
ID rcu:RCOM_1039690
description protein with unknown function (EC:2.5.1.60)
nr
ID XP_012068031.1
description PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
swissprot
ID A5A779
description Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1
trembl
ID A0A067KZ54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15898 PE=4 SV=1
Gene Ontology
ID GO:0008318
description geranylgeranyl transferase type-2 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58441: 3679-4213 , PASA_asmbl_58442: 3272-6774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079326_010 0.0 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
2 Hb_004881_050 0.0602046003 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
3 Hb_000372_040 0.071202997 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_002475_050 0.0726901831 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
5 Hb_011644_020 0.0740528501 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
6 Hb_005368_010 0.0831682196 - - PREDICTED: umecyanin-like [Jatropha curcas]
7 Hb_000134_360 0.0854252724 - - PREDICTED: protein gar2 [Jatropha curcas]
8 Hb_011282_030 0.0892125898 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
9 Hb_000849_100 0.0893777365 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
10 Hb_002811_120 0.0922585191 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
11 Hb_000631_150 0.0931858207 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
12 Hb_001863_110 0.0939951066 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_005000_270 0.0947988361 - - unnamed protein product [Vitis vinifera]
14 Hb_001341_050 0.0954490325 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
15 Hb_000199_080 0.0957587134 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000116_170 0.0959710478 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
17 Hb_000684_180 0.0964934525 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
18 Hb_003716_020 0.0969193226 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
19 Hb_000176_110 0.0988824521 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
20 Hb_000165_130 0.0993973508 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]

Gene co-expression network

sample Hb_079326_010 Hb_079326_010 Hb_004881_050 Hb_004881_050 Hb_079326_010--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_000372_040--Hb_002475_050 Hb_002739_080 Hb_002739_080 Hb_000372_040--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_000372_040--Hb_005000_270 Hb_000372_040--Hb_000134_360 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_002475_050--Hb_004881_050 Hb_002475_050--Hb_002739_080 Hb_002475_050--Hb_005000_270 Hb_000684_180 Hb_000684_180 Hb_011644_020--Hb_000684_180 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_001195_030 Hb_001195_030 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_000424_230 Hb_000424_230 Hb_005368_010--Hb_000424_230 Hb_001341_050 Hb_001341_050 Hb_005368_010--Hb_001341_050 Hb_001279_330 Hb_001279_330 Hb_005368_010--Hb_001279_330 Hb_005271_080 Hb_005271_080 Hb_005368_010--Hb_005271_080 Hb_000116_170 Hb_000116_170 Hb_005368_010--Hb_000116_170 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.492 19.6781 19.3947 37.2045 120.025 150.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.4996 26.4144 36.1898 28.6082 17.9209

CAGE analysis