Hb_005368_010

Information

Type -
Description -
Location Contig5368: 8604-11182
Sequence    

Annotation

kegg
ID rcu:RCOM_0670150
description Cucumber peeling cupredoxin, putative
nr
ID XP_012072693.1
description PREDICTED: umecyanin-like [Jatropha curcas]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID A0A067L128
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06463 PE=4 SV=1
Gene Ontology
ID GO:0009055
description cucumber peeling

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47588: 8735-11296
cDNA
(Sanger)
(ID:Location)		 013_K06.ab1: 8735-11259

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005368_010 0.0 - - PREDICTED: umecyanin-like [Jatropha curcas]
2 Hb_000424_230 0.0620341313 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
3 Hb_079326_010 0.0831682196 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
4 Hb_001341_050 0.090706967 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
5 Hb_001279_330 0.0982782562 - - Protein bem46, putative [Ricinus communis]
6 Hb_005271_080 0.1047681087 - - receptor kinase, putative [Ricinus communis]
7 Hb_000116_170 0.1060305464 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
8 Hb_004881_050 0.1082583927 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
9 Hb_002942_080 0.1113557329 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
10 Hb_000364_060 0.1115309514 - - JHL03K20.4 [Jatropha curcas]
11 Hb_001689_020 0.1126804089 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
12 Hb_083043_010 0.1128517867 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
13 Hb_003581_020 0.1130910755 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
14 Hb_000372_040 0.1138828285 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_007668_040 0.1146846653 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
16 Hb_002475_050 0.1160638569 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
17 Hb_001863_110 0.1177013821 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_006922_080 0.1195148816 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
19 Hb_003434_060 0.1198332685 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
20 Hb_000197_210 0.1200790104 - - phosphatidylinositol transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005368_010 Hb_005368_010 Hb_000424_230 Hb_000424_230 Hb_005368_010--Hb_000424_230 Hb_079326_010 Hb_079326_010 Hb_005368_010--Hb_079326_010 Hb_001341_050 Hb_001341_050 Hb_005368_010--Hb_001341_050 Hb_001279_330 Hb_001279_330 Hb_005368_010--Hb_001279_330 Hb_005271_080 Hb_005271_080 Hb_005368_010--Hb_005271_080 Hb_000116_170 Hb_000116_170 Hb_005368_010--Hb_000116_170 Hb_001689_020 Hb_001689_020 Hb_000424_230--Hb_001689_020 Hb_015763_030 Hb_015763_030 Hb_000424_230--Hb_015763_030 Hb_002942_080 Hb_002942_080 Hb_000424_230--Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_000424_230--Hb_007668_040 Hb_000424_230--Hb_001279_330 Hb_004881_050 Hb_004881_050 Hb_079326_010--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_001341_050--Hb_007668_040 Hb_000364_060 Hb_000364_060 Hb_001341_050--Hb_000364_060 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_005271_080--Hb_000424_230 Hb_005271_080--Hb_001689_020 Hb_000197_210 Hb_000197_210 Hb_005271_080--Hb_000197_210 Hb_000261_520 Hb_000261_520 Hb_005271_080--Hb_000261_520 Hb_004608_020 Hb_004608_020 Hb_000116_170--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000116_170--Hb_000631_150 Hb_006922_080 Hb_006922_080 Hb_000116_170--Hb_006922_080 Hb_025557_020 Hb_025557_020 Hb_000116_170--Hb_025557_020 Hb_000849_100 Hb_000849_100 Hb_000116_170--Hb_000849_100 Hb_009118_010 Hb_009118_010 Hb_000116_170--Hb_009118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.67 31.1175 66.5511 96.2424 253.877 301.212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.087 49.9522 73.6899 52.6251 41.6012

CAGE analysis