Hb_004881_050

Information

Type -
Description -
Location Contig4881: 47208-59911
Sequence    

Annotation

kegg
ID rcu:RCOM_1337330
description GTP-dependent nucleic acid-binding protein engD, putative
nr
ID XP_012075611.1
description PREDICTED: obg-like ATPase 1 [Jatropha curcas]
swissprot
ID Q5ZM25
description Obg-like ATPase 1 OS=Gallus gallus GN=OLA1 PE=2 SV=1
trembl
ID A0A067KRK6
description Obg-like ATPase 1 OS=Jatropha curcas GN=JCGZ_09213 PE=3 SV=1
Gene Ontology
ID GO:0005829
description obg-like atpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45112: 47219-59883
cDNA
(Sanger)
(ID:Location)		 025_P11.ab1: 47247-52221

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_050 0.0 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
2 Hb_079326_010 0.0602046003 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
3 Hb_000457_060 0.0654447469 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
4 Hb_000372_040 0.0682092929 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_003434_060 0.073373747 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
6 Hb_002811_120 0.0752312 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
7 Hb_063047_010 0.0797780917 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
8 Hb_000631_150 0.0801710919 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
9 Hb_001609_010 0.08026843 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
10 Hb_000335_010 0.0839569244 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_002475_050 0.0841303921 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
12 Hb_005000_100 0.0851736527 - - PCI domain-containing protein 2 [Morus notabilis]
13 Hb_003581_020 0.0852694114 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
14 Hb_005129_050 0.0866284619 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
15 Hb_000116_170 0.086980313 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
16 Hb_004608_020 0.0873307955 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
17 Hb_001341_050 0.0881936174 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
18 Hb_006114_020 0.0892358812 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000134_360 0.089246581 - - PREDICTED: protein gar2 [Jatropha curcas]
20 Hb_001863_110 0.0904966915 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004881_050 Hb_004881_050 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_000335_010 Hb_000335_010 Hb_000457_060--Hb_000335_010 Hb_000370_030 Hb_000370_030 Hb_000457_060--Hb_000370_030 Hb_004608_020 Hb_004608_020 Hb_000457_060--Hb_004608_020 Hb_000789_080 Hb_000789_080 Hb_000457_060--Hb_000789_080 Hb_000631_150 Hb_000631_150 Hb_000457_060--Hb_000631_150 Hb_000372_040--Hb_002475_050 Hb_002739_080 Hb_002739_080 Hb_000372_040--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_000372_040--Hb_005000_270 Hb_000372_040--Hb_000134_360 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_003711_040 Hb_003711_040 Hb_002811_120--Hb_003711_040 Hb_002811_120--Hb_003434_060 Hb_002811_120--Hb_079326_010 Hb_001863_110 Hb_001863_110 Hb_002811_120--Hb_001863_110 Hb_002811_120--Hb_000316_030 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_001040_160 Hb_001040_160 Hb_063047_010--Hb_001040_160 Hb_001871_040 Hb_001871_040 Hb_063047_010--Hb_001871_040 Hb_063047_010--Hb_000316_030 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
335.712 87.3111 59.7694 105.558 329.169 514.876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
193.348 85.8533 126.084 134.313 67.7676

CAGE analysis