Hb_003711_040

Information

Type -
Description -
Location Contig3711: 66640-68020
Sequence    

Annotation

kegg
ID rcu:RCOM_1266830
description ubx domain-containing, putative
nr
ID XP_012066236.1
description PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q9ZW74
description Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana GN=PUX11 PE=1 SV=2
trembl
ID A0A067LEC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23807 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38056: 37300-84711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003711_040 0.0 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
2 Hb_083043_010 0.0792379719 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
3 Hb_006455_090 0.082885183 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
4 Hb_002811_120 0.0842885097 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
5 Hb_004881_050 0.0957302115 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
6 Hb_001609_010 0.0984741706 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
7 Hb_005000_270 0.1011763926 - - unnamed protein product [Vitis vinifera]
8 Hb_003363_010 0.1012550213 - - conserved hypothetical protein [Ricinus communis]
9 Hb_063047_010 0.1026352733 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
10 Hb_001040_160 0.1035220898 - - glutaredoxin, grx, putative [Ricinus communis]
11 Hb_000152_740 0.1061335454 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
12 Hb_006114_020 0.1094264685 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000372_040 0.1105229945 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_005635_010 0.111253723 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
15 Hb_002475_050 0.111518799 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
16 Hb_000316_030 0.1126654288 - - zinc finger protein, putative [Ricinus communis]
17 Hb_003581_020 0.1127871688 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_000453_080 0.1128520415 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000136_150 0.1134479521 - - hypothetical protein VITISV_038366 [Vitis vinifera]
20 Hb_006455_080 0.1140505424 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003711_040 Hb_003711_040 Hb_083043_010 Hb_083043_010 Hb_003711_040--Hb_083043_010 Hb_006455_090 Hb_006455_090 Hb_003711_040--Hb_006455_090 Hb_002811_120 Hb_002811_120 Hb_003711_040--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_083043_010--Hb_002811_120 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010 Hb_006455_080 Hb_006455_080 Hb_006455_090--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_006455_090--Hb_006455_110 Hb_012286_050 Hb_012286_050 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010 Hb_002811_120--Hb_004881_050 Hb_003434_060 Hb_003434_060 Hb_002811_120--Hb_003434_060 Hb_079326_010 Hb_079326_010 Hb_002811_120--Hb_079326_010 Hb_001863_110 Hb_001863_110 Hb_002811_120--Hb_001863_110 Hb_000316_030 Hb_000316_030 Hb_002811_120--Hb_000316_030 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_004881_050--Hb_003434_060 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_001609_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001609_010--Hb_001040_160 Hb_001609_010--Hb_000316_030 Hb_001871_040 Hb_001871_040 Hb_001609_010--Hb_001871_040 Hb_001609_010--Hb_004881_050 Hb_001609_010--Hb_000457_060 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3975 14.4619 4.65935 16.0228 39.7796 87.9384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4474 12.0673 14.3181 13.6631 11.1429

CAGE analysis