Hb_001582_030

Information

Type -
Description -
Location Contig1582: 156946-161279
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06350g
description POPTRDRAFT_578406; hypothetical protein
nr
ID XP_012078933.1
description PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
swissprot
ID Q5ZMS6
description Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2 SV=1
trembl
ID B9ILH7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06350g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13942: 157400-159538 , PASA_asmbl_13943: 158753-158960 , PASA_asmbl_13944: 159555-161262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001582_030 0.0 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
2 Hb_005000_270 0.0579605146 - - unnamed protein product [Vitis vinifera]
3 Hb_000212_280 0.0767792816 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
4 Hb_000134_360 0.0818653745 - - PREDICTED: protein gar2 [Jatropha curcas]
5 Hb_019871_020 0.0820544085 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
6 Hb_008528_010 0.0832960873 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
7 Hb_000732_020 0.0850755155 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
8 Hb_002725_070 0.0862956327 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
9 Hb_113216_010 0.0879518965 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
10 Hb_005295_040 0.0890911572 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
11 Hb_002374_150 0.0896291963 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
12 Hb_003716_020 0.0899739832 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
13 Hb_009421_030 0.0901643013 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
14 Hb_005635_010 0.0904639622 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
15 Hb_000453_080 0.0912338117 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_012016_020 0.0913781467 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
17 Hb_000003_790 0.0919203376 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
18 Hb_002918_070 0.0920289164 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
19 Hb_001486_120 0.0932755511 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_004032_350 0.0956638888 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001582_030 Hb_001582_030 Hb_005000_270 Hb_005000_270 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_000134_360 Hb_000134_360 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_008528_010 Hb_008528_010 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_002918_070 Hb_002918_070 Hb_005000_270--Hb_002918_070 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_000608_340 Hb_000608_340 Hb_019871_020--Hb_000608_340 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_004531_090 Hb_004531_090 Hb_019871_020--Hb_004531_090 Hb_000185_090 Hb_000185_090 Hb_019871_020--Hb_000185_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040 Hb_008528_010--Hb_000003_790 Hb_008528_010--Hb_001486_120 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_002955_010 Hb_002955_010 Hb_000732_020--Hb_002955_010 Hb_000732_020--Hb_113216_010 Hb_002986_050 Hb_002986_050 Hb_000732_020--Hb_002986_050 Hb_000322_170 Hb_000322_170 Hb_000732_020--Hb_000322_170 Hb_000270_450 Hb_000270_450 Hb_000732_020--Hb_000270_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.4236 22.4572 6.44861 9.12759 64.5205 80.8224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0975 13.2073 16.4398 12.9984 5.50769

CAGE analysis