Hb_022288_010

Information

Type -
Description -
Location Contig22288: 5253-20896
Sequence    

Annotation

kegg
ID rcu:RCOM_0915870
description ubiquitin ligase E3 alpha, putative
nr
ID XP_002532325.1
description ubiquitin ligase E3 alpha, putative [Ricinus communis]
swissprot
ID F4KCC2
description E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana GN=PRT6 PE=2 SV=1
trembl
ID B9T256
description Ubiquitin ligase E3 alpha, putative OS=Ricinus communis GN=RCOM_0915870 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ubr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23077: 5301-6142 , PASA_asmbl_23080: 13152-17383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022288_010 0.0 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
2 Hb_008528_010 0.0836039888 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
3 Hb_000016_110 0.0884036268 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
4 Hb_000805_310 0.0887731686 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
5 Hb_174865_050 0.0918635577 - - PREDICTED: neuroguidin [Jatropha curcas]
6 Hb_011496_010 0.095956352 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
7 Hb_000208_290 0.1031023193 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
8 Hb_041091_010 0.1031579557 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
9 Hb_001486_120 0.1061828147 - - PREDICTED: importin-5-like [Jatropha curcas]
10 Hb_001431_070 0.107271101 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
11 Hb_000134_360 0.1072918737 - - PREDICTED: protein gar2 [Jatropha curcas]
12 Hb_113216_010 0.1092199338 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
13 Hb_002675_190 0.1096218406 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000161_030 0.1104614487 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
15 Hb_000212_280 0.1105424078 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
16 Hb_000077_050 0.1113046268 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_002235_360 0.1116681121 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
18 Hb_000573_040 0.1119972655 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
19 Hb_005000_270 0.1130916687 - - unnamed protein product [Vitis vinifera]
20 Hb_001034_020 0.1132058426 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]

Gene co-expression network

sample Hb_022288_010 Hb_022288_010 Hb_008528_010 Hb_008528_010 Hb_022288_010--Hb_008528_010 Hb_000016_110 Hb_000016_110 Hb_022288_010--Hb_000016_110 Hb_000805_310 Hb_000805_310 Hb_022288_010--Hb_000805_310 Hb_174865_050 Hb_174865_050 Hb_022288_010--Hb_174865_050 Hb_011496_010 Hb_011496_010 Hb_022288_010--Hb_011496_010 Hb_000208_290 Hb_000208_290 Hb_022288_010--Hb_000208_290 Hb_000134_360 Hb_000134_360 Hb_008528_010--Hb_000134_360 Hb_000003_790 Hb_000003_790 Hb_008528_010--Hb_000003_790 Hb_001486_120 Hb_001486_120 Hb_008528_010--Hb_001486_120 Hb_001582_030 Hb_001582_030 Hb_008528_010--Hb_001582_030 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_005399_010 Hb_005399_010 Hb_000016_110--Hb_005399_010 Hb_000497_140 Hb_000497_140 Hb_000016_110--Hb_000497_140 Hb_006091_030 Hb_006091_030 Hb_000016_110--Hb_006091_030 Hb_041091_010 Hb_041091_010 Hb_000016_110--Hb_041091_010 Hb_000016_110--Hb_012016_020 Hb_000805_310--Hb_001486_120 Hb_005295_040 Hb_005295_040 Hb_000805_310--Hb_005295_040 Hb_000136_150 Hb_000136_150 Hb_000805_310--Hb_000136_150 Hb_153547_010 Hb_153547_010 Hb_000805_310--Hb_153547_010 Hb_000230_370 Hb_000230_370 Hb_000805_310--Hb_000230_370 Hb_005129_050 Hb_005129_050 Hb_000805_310--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_174865_050--Hb_000212_280 Hb_000573_040 Hb_000573_040 Hb_174865_050--Hb_000573_040 Hb_113216_010 Hb_113216_010 Hb_174865_050--Hb_113216_010 Hb_003666_050 Hb_003666_050 Hb_174865_050--Hb_003666_050 Hb_001195_030 Hb_001195_030 Hb_174865_050--Hb_001195_030 Hb_000185_090 Hb_000185_090 Hb_174865_050--Hb_000185_090 Hb_002169_010 Hb_002169_010 Hb_011496_010--Hb_002169_010 Hb_029281_010 Hb_029281_010 Hb_011496_010--Hb_029281_010 Hb_000462_150 Hb_000462_150 Hb_011496_010--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050 Hb_004156_060 Hb_004156_060 Hb_000208_290--Hb_004156_060 Hb_000161_030 Hb_000161_030 Hb_000208_290--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_000208_290--Hb_006029_010 Hb_154381_050 Hb_154381_050 Hb_000208_290--Hb_154381_050 Hb_000208_290--Hb_006091_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.903 6.95247 2.20507 3.18537 33.6872 48.6338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7276 7.57915 17.7653 6.81429 5.13902

CAGE analysis