Hb_154381_050

Information

Type -
Description -
Location Contig154381: 37175-38401
Sequence    

Annotation

kegg
ID rcu:RCOM_1447680
description hypothetical protein
nr
ID XP_002512931.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD58
description Putative F-box protein At3g47150 OS=Arabidopsis thaliana GN=At3g47150 PE=4 SV=2
trembl
ID B9RH72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13332: 37380-37665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154381_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004156_060 0.0747841792 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
3 Hb_001115_050 0.07732539 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_005410_010 0.08642429 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
5 Hb_002172_030 0.0873400521 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
6 Hb_006029_010 0.0930761844 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
7 Hb_012654_020 0.0981531732 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002078_040 0.1008179083 - - protein with unknown function [Ricinus communis]
9 Hb_000208_290 0.1036820627 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
10 Hb_000161_030 0.1078495 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
11 Hb_001628_110 0.1078945445 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
12 Hb_001846_080 0.112277445 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
13 Hb_007111_040 0.1129088316 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
14 Hb_000853_370 0.1135463878 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
15 Hb_000230_110 0.1162952414 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
16 Hb_011021_030 0.1166160223 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_000300_530 0.1182862655 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
18 Hb_000210_130 0.1207047311 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
19 Hb_000988_050 0.1224904448 - - conserved hypothetical protein [Ricinus communis]
20 Hb_098315_110 0.1242294559 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_154381_050 Hb_154381_050 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_005410_010 Hb_005410_010 Hb_154381_050--Hb_005410_010 Hb_002172_030 Hb_002172_030 Hb_154381_050--Hb_002172_030 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_012654_020 Hb_012654_020 Hb_154381_050--Hb_012654_020 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_004156_060--Hb_006029_010 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_004156_060--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_004156_060--Hb_012055_020 Hb_002200_110 Hb_002200_110 Hb_001115_050--Hb_002200_110 Hb_001115_050--Hb_006029_010 Hb_066807_010 Hb_066807_010 Hb_001115_050--Hb_066807_010 Hb_001115_050--Hb_002172_030 Hb_001115_050--Hb_004156_060 Hb_005410_010--Hb_012654_020 Hb_005410_010--Hb_002172_030 Hb_002149_040 Hb_002149_040 Hb_005410_010--Hb_002149_040 Hb_001846_080 Hb_001846_080 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_002172_030--Hb_012654_020 Hb_002172_030--Hb_001846_080 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_006029_010--Hb_000161_030 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_012654_020--Hb_000050_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.473 2.20731 0.881867 2.66698 34.294 28.5875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.78223 9.88218 13.0831 2.90218 0.833381

CAGE analysis