Hb_002200_110

Information

Type -
Description -
Location Contig2200: 94131-99536
Sequence    

Annotation

kegg
ID rcu:RCOM_0137960
description hypothetical protein
nr
ID XP_002526154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94CA0
description Protein LAZ1 homolog 1 OS=Arabidopsis thaliana GN=At1g77220 PE=2 SV=1
trembl
ID B9SJI5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0137960 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 184 homolog ddb_g0279555 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017134_040 0.10013167 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
3 Hb_009510_030 0.1059884055 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
4 Hb_000057_060 0.1118678978 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
5 Hb_003404_030 0.112149099 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_001115_050 0.1126986022 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
7 Hb_003786_110 0.1152984087 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
8 Hb_002038_060 0.1154681947 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
9 Hb_026048_090 0.1169865457 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000230_110 0.1181256157 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
11 Hb_000771_140 0.119517407 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
12 Hb_014067_010 0.1195492103 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
13 Hb_004126_010 0.1224745024 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
14 Hb_114684_020 0.123442722 - - beta-1,3-glucanase [Hevea brasiliensis]
15 Hb_000249_110 0.1237536333 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
16 Hb_002506_010 0.1239278906 - - choline transporter-related family protein [Populus trichocarpa]
17 Hb_003001_030 0.1240590145 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_007178_010 0.1263510571 - - pseudo-hevein [Hevea brasiliensis]
19 Hb_007760_030 0.126742621 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
20 Hb_002067_160 0.1278563012 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_002200_110 Hb_002200_110 Hb_017134_040 Hb_017134_040 Hb_002200_110--Hb_017134_040 Hb_009510_030 Hb_009510_030 Hb_002200_110--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_002200_110--Hb_000057_060 Hb_003404_030 Hb_003404_030 Hb_002200_110--Hb_003404_030 Hb_001115_050 Hb_001115_050 Hb_002200_110--Hb_001115_050 Hb_003786_110 Hb_003786_110 Hb_002200_110--Hb_003786_110 Hb_005730_020 Hb_005730_020 Hb_017134_040--Hb_005730_020 Hb_002890_220 Hb_002890_220 Hb_017134_040--Hb_002890_220 Hb_000329_610 Hb_000329_610 Hb_017134_040--Hb_000329_610 Hb_007178_010 Hb_007178_010 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_017134_040--Hb_003786_110 Hb_004126_010 Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_002506_010 Hb_002506_010 Hb_009510_030--Hb_002506_010 Hb_026048_090 Hb_026048_090 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_009510_030--Hb_003001_030 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_003404_030 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_000057_060--Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_003404_030--Hb_127979_010 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_154381_050 Hb_154381_050 Hb_001115_050--Hb_154381_050 Hb_006029_010 Hb_006029_010 Hb_001115_050--Hb_006029_010 Hb_066807_010 Hb_066807_010 Hb_001115_050--Hb_066807_010 Hb_002172_030 Hb_002172_030 Hb_001115_050--Hb_002172_030 Hb_004156_060 Hb_004156_060 Hb_001115_050--Hb_004156_060 Hb_003786_110--Hb_000329_610 Hb_001504_170 Hb_001504_170 Hb_003786_110--Hb_001504_170 Hb_003786_110--Hb_007178_010 Hb_003786_110--Hb_026048_090 Hb_002067_160 Hb_002067_160 Hb_003786_110--Hb_002067_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.2331 2.19749 1.74956 6.7805 67.3176 50.6678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0066 39.3571 47.1278 8.77553 2.18369

CAGE analysis