Hb_001115_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1115: 76508-88372
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072750.1
description PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03506: 76443-81127 , PASA_asmbl_03507: 79987-80744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_050 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
2 Hb_154381_050 0.07732539 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002200_110 0.1126986022 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006029_010 0.1141264876 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_066807_010 0.1144657213 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
6 Hb_002172_030 0.116196327 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
7 Hb_004156_060 0.1182905244 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
8 Hb_005410_010 0.1188313158 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
9 Hb_000853_370 0.1233499798 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
10 Hb_012654_020 0.1236497504 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001623_580 0.1240089731 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
12 Hb_001628_110 0.1251614387 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
13 Hb_003786_110 0.1258465315 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
14 Hb_000210_130 0.1279555826 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
15 Hb_000345_560 0.1309587973 - - -
16 Hb_000329_610 0.1313759683 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000161_030 0.1324795498 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
18 Hb_001504_170 0.1330097856 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
19 Hb_000230_110 0.1334423144 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
20 Hb_002078_040 0.1353943819 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001115_050 Hb_001115_050 Hb_154381_050 Hb_154381_050 Hb_001115_050--Hb_154381_050 Hb_002200_110 Hb_002200_110 Hb_001115_050--Hb_002200_110 Hb_006029_010 Hb_006029_010 Hb_001115_050--Hb_006029_010 Hb_066807_010 Hb_066807_010 Hb_001115_050--Hb_066807_010 Hb_002172_030 Hb_002172_030 Hb_001115_050--Hb_002172_030 Hb_004156_060 Hb_004156_060 Hb_001115_050--Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_005410_010 Hb_005410_010 Hb_154381_050--Hb_005410_010 Hb_154381_050--Hb_002172_030 Hb_154381_050--Hb_006029_010 Hb_012654_020 Hb_012654_020 Hb_154381_050--Hb_012654_020 Hb_017134_040 Hb_017134_040 Hb_002200_110--Hb_017134_040 Hb_009510_030 Hb_009510_030 Hb_002200_110--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_002200_110--Hb_000057_060 Hb_003404_030 Hb_003404_030 Hb_002200_110--Hb_003404_030 Hb_003786_110 Hb_003786_110 Hb_002200_110--Hb_003786_110 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_026048_100 Hb_026048_100 Hb_066807_010--Hb_026048_100 Hb_002681_140 Hb_002681_140 Hb_066807_010--Hb_002681_140 Hb_004852_030 Hb_004852_030 Hb_066807_010--Hb_004852_030 Hb_032531_030 Hb_032531_030 Hb_066807_010--Hb_032531_030 Hb_000365_360 Hb_000365_360 Hb_066807_010--Hb_000365_360 Hb_001902_050 Hb_001902_050 Hb_066807_010--Hb_001902_050 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_005410_010 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_004156_060--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_004156_060--Hb_012055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1328 2.51461 2.81233 3.54283 47.008 36.0937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.463 20.8192 18.5349 3.13828 1.34676

CAGE analysis