Hb_012654_020

Information

Type -
Description -
Location Contig12654: 46921-71226
Sequence    

Annotation

kegg
ID rcu:RCOM_0813690
description hypothetical protein
nr
ID XP_002518778.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0CM30
description Autophagy-related protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG2 PE=3 SV=1
trembl
ID B9RYJ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813690 PE=4 SV=1
Gene Ontology
ID GO:0006914
description autophagy isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08001: 54101-56057 , PASA_asmbl_08002: 56143-58284 , PASA_asmbl_08006: 62386-70517 , PASA_asmbl_08008: 65946-66094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012654_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002172_030 0.0501225471 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
3 Hb_005410_010 0.0726646353 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
4 Hb_011609_190 0.0768977985 - - 14-3-3 protein 2 [Hevea brasiliensis]
5 Hb_002078_040 0.086287899 - - protein with unknown function [Ricinus communis]
6 Hb_001776_080 0.0871877689 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
7 Hb_000050_120 0.0874524592 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
8 Hb_001846_080 0.0896029584 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
9 Hb_000320_440 0.0931534143 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
10 Hb_003777_220 0.0956843599 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
11 Hb_001433_170 0.0979874564 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
12 Hb_154381_050 0.0981531732 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000176_140 0.0982414386 - - PREDICTED: bystin [Jatropha curcas]
14 Hb_000483_370 0.0985844431 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000179_250 0.0986916618 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
16 Hb_002681_140 0.1008160171 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
17 Hb_000491_080 0.1014386462 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
18 Hb_011316_030 0.1047533003 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
19 Hb_000088_180 0.1053518222 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
20 Hb_000117_040 0.109452553 - - 30S ribosomal protein S6A [Hevea brasiliensis]

Gene co-expression network

sample Hb_012654_020 Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_012654_020--Hb_002172_030 Hb_005410_010 Hb_005410_010 Hb_012654_020--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_000050_120 Hb_000050_120 Hb_012654_020--Hb_000050_120 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_005410_010 Hb_002172_030--Hb_000050_120 Hb_002172_030--Hb_011609_190 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_005410_010--Hb_154381_050 Hb_002149_040 Hb_002149_040 Hb_005410_010--Hb_002149_040 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_000117_040 Hb_000117_040 Hb_011609_190--Hb_000117_040 Hb_000179_250 Hb_000179_250 Hb_011609_190--Hb_000179_250 Hb_001433_170 Hb_001433_170 Hb_011609_190--Hb_001433_170 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080 Hb_002078_040--Hb_000050_120 Hb_003304_080 Hb_003304_080 Hb_002078_040--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_002078_040--Hb_007810_040 Hb_002078_040--Hb_002172_030 Hb_002078_040--Hb_154381_050 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_000320_440 Hb_000320_440 Hb_001776_080--Hb_000320_440 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_001776_080--Hb_002149_040 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_000050_120--Hb_003304_080 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_000050_120--Hb_007810_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.889 17.8556 5.82747 5.9458 186.402 148.481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.8142 54.1509 65.5139 12.935 7.36312

CAGE analysis