Hb_001776_080

Information

Type -
Description -
Location Contig1776: 81582-83122
Sequence    

Annotation

kegg
ID rcu:RCOM_1166000
description nucleic acid binding protein, putative
nr
ID XP_012075959.1
description PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KE33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11046 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cax-interacting protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17065: 80984-83188 , PASA_asmbl_17066: 81291-81695
cDNA
(Sanger)
(ID:Location)		 016_G22.ab1: 81087-82163 , 024_N03.ab1: 81087-82189 , 035_G17.ab1: 81087-82225 , 045_O10.ab1: 81090-82193

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_080 0.0 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
2 Hb_000176_140 0.0588364487 - - PREDICTED: bystin [Jatropha curcas]
3 Hb_000320_440 0.0635049556 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
4 Hb_160818_010 0.0720100436 - - -
5 Hb_002149_040 0.0772956682 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000179_250 0.077597543 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
7 Hb_011316_030 0.0784762454 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
8 Hb_002377_050 0.0816576297 - - Agmatine deiminase, putative [Ricinus communis]
9 Hb_000491_080 0.0829966581 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
10 Hb_000088_180 0.0846811158 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
11 Hb_002044_090 0.0856709204 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_003506_040 0.0862770587 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
13 Hb_012654_020 0.0871877689 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006478_070 0.0887660593 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
15 Hb_011609_190 0.0931514299 - - 14-3-3 protein 2 [Hevea brasiliensis]
16 Hb_001140_080 0.093966908 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
17 Hb_003777_220 0.0943465729 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
18 Hb_000926_270 0.0946622121 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
19 Hb_000062_230 0.0951192817 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
20 Hb_002169_010 0.0963544288 - - PREDICTED: la-related protein 6B [Jatropha curcas]

Gene co-expression network

sample Hb_001776_080 Hb_001776_080 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_000320_440 Hb_000320_440 Hb_001776_080--Hb_000320_440 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_127979_010 Hb_127979_010 Hb_000176_140--Hb_127979_010 Hb_000176_140--Hb_000179_250 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010 Hb_005016_030 Hb_005016_030 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_001016_060 Hb_001016_060 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_006173_020 Hb_006173_020 Hb_002149_040--Hb_006173_020 Hb_001433_170 Hb_001433_170 Hb_000179_250--Hb_001433_170 Hb_000179_250--Hb_002044_090 Hb_000179_250--Hb_011316_030 Hb_011609_190 Hb_011609_190 Hb_000179_250--Hb_011609_190 Hb_011316_030--Hb_003777_220 Hb_011316_030--Hb_000491_080 Hb_011316_030--Hb_127979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1993.41 371.959 59.988 133.188 1936.38 1615.68
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1058.64 602.961 681.373 299.063 82.9692

CAGE analysis