Hb_002149_040

Information

Type -
Description -
Location Contig2149: 29175-36878
Sequence    

Annotation

kegg
ID rcu:RCOM_1213150
description hypothetical protein
nr
ID XP_002524593.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GUM4
description Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2
trembl
ID B9SF24
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1213150 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized membrane protein at3g27390 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22160: 30309-30641 , PASA_asmbl_22161: 31281-32294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002149_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005016_030 0.0745276601 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
3 Hb_002405_020 0.0769599297 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
4 Hb_001776_080 0.0772956682 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_001016_060 0.0808540318 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000926_270 0.0860746877 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
7 Hb_006173_020 0.0897069766 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
8 Hb_000320_440 0.0925982488 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
9 Hb_001178_060 0.0942827852 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
10 Hb_000088_180 0.0944026325 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
11 Hb_005410_010 0.0947938659 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
12 Hb_000161_030 0.0976443675 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
13 Hb_000270_450 0.0991888908 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
14 Hb_160818_010 0.1006053328 - - -
15 Hb_029281_010 0.1009331887 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
16 Hb_000953_140 0.1027771419 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
17 Hb_000322_170 0.102839829 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
18 Hb_001034_020 0.1037581988 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
19 Hb_002377_050 0.1048131795 - - Agmatine deiminase, putative [Ricinus communis]
20 Hb_001357_190 0.1058725924 - - ribonuclease III, putative [Ricinus communis]

Gene co-expression network

sample Hb_002149_040 Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_001016_060 Hb_001016_060 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_006173_020 Hb_006173_020 Hb_002149_040--Hb_006173_020 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_005016_030--Hb_006173_020 Hb_000320_440 Hb_000320_440 Hb_005016_030--Hb_000320_440 Hb_005016_030--Hb_001016_060 Hb_000771_160 Hb_000771_160 Hb_002405_020--Hb_000771_160 Hb_001357_190 Hb_001357_190 Hb_002405_020--Hb_001357_190 Hb_002405_020--Hb_001016_060 Hb_002405_020--Hb_006173_020 Hb_005410_010 Hb_005410_010 Hb_002405_020--Hb_005410_010 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_001776_080--Hb_000320_440 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_001016_060--Hb_006173_020 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340 Hb_000926_270--Hb_005016_030 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000926_270--Hb_000692_260 Hb_000926_270--Hb_001016_060 Hb_009615_110 Hb_009615_110 Hb_006173_020--Hb_009615_110 Hb_019871_020 Hb_019871_020 Hb_006173_020--Hb_019871_020 Hb_006173_020--Hb_000320_440 Hb_000270_450 Hb_000270_450 Hb_006173_020--Hb_000270_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7026 5.14535 0.473192 1.95191 20.4108 17.0941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.74772 6.68734 6.35341 3.00002 0.682849

CAGE analysis