Hb_000692_260

Information

Type -
Description -
Location Contig692: 215132-216370
Sequence    

Annotation

kegg
ID cic:CICLE_v10002475mg
description hypothetical protein
nr
ID XP_012073714.1
description PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
swissprot
ID P42844
description Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZIM17 PE=1 SV=2
trembl
ID A0A067KL64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08158 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zim17-type zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54462: 215122-215271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_260 0.0 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
2 Hb_001016_060 0.08535593 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000926_270 0.0964511027 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_003605_070 0.0984783783 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
5 Hb_000284_200 0.1001092731 - - -
6 Hb_000300_540 0.1027168538 - - PREDICTED: syntaxin-132 [Jatropha curcas]
7 Hb_007786_010 0.1038535292 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
8 Hb_000062_230 0.1056701742 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
9 Hb_000481_010 0.1067430077 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
10 Hb_000363_340 0.1071891115 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
11 Hb_000088_180 0.1076805089 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
12 Hb_000976_270 0.1099327823 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
13 Hb_005725_070 0.1115851152 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001663_110 0.1119740416 - - RNA binding protein, putative [Ricinus communis]
15 Hb_024399_010 0.1123492177 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
16 Hb_004032_460 0.114549643 - - -
17 Hb_002149_040 0.1155868481 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000038_130 0.117533596 - - -
19 Hb_011930_010 0.1182420125 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
20 Hb_002044_090 0.1185030748 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000692_260 Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_000692_260--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_000692_260--Hb_000926_270 Hb_003605_070 Hb_003605_070 Hb_000692_260--Hb_003605_070 Hb_000284_200 Hb_000284_200 Hb_000692_260--Hb_000284_200 Hb_000300_540 Hb_000300_540 Hb_000692_260--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000692_260--Hb_007786_010 Hb_006173_020 Hb_006173_020 Hb_001016_060--Hb_006173_020 Hb_002149_040 Hb_002149_040 Hb_001016_060--Hb_002149_040 Hb_001016_060--Hb_003605_070 Hb_005016_030 Hb_005016_030 Hb_001016_060--Hb_005016_030 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340 Hb_000926_270--Hb_002149_040 Hb_000926_270--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000926_270--Hb_001016_060 Hb_005288_160 Hb_005288_160 Hb_003605_070--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_003605_070--Hb_000209_090 Hb_001623_580 Hb_001623_580 Hb_003605_070--Hb_001623_580 Hb_002276_190 Hb_002276_190 Hb_003605_070--Hb_002276_190 Hb_000847_070 Hb_000847_070 Hb_003605_070--Hb_000847_070 Hb_002681_140 Hb_002681_140 Hb_000284_200--Hb_002681_140 Hb_000015_010 Hb_000015_010 Hb_000284_200--Hb_000015_010 Hb_000284_200--Hb_000847_070 Hb_004502_030 Hb_004502_030 Hb_000284_200--Hb_004502_030 Hb_006637_060 Hb_006637_060 Hb_000284_200--Hb_006637_060 Hb_001514_200 Hb_001514_200 Hb_000284_200--Hb_001514_200 Hb_000300_540--Hb_007786_010 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000300_540--Hb_000363_340 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370 Hb_002818_040 Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.3551 9.1846 5.6804 3.86606 47.6837 36.426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1304 23.9916 17.5256 5.30876 3.06979

CAGE analysis