Hb_004502_030

Information

Type -
Description -
Location Contig4502: 9954-14259
Sequence    

Annotation

kegg
ID csv:101226679
description exosome complex component CSL4-like
nr
ID ABK93772.1
description unknown [Populus trichocarpa]
swissprot
ID Q9DAA6
description Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=2 SV=1
trembl
ID A9PBL9
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0000178
description exosome complex component csl4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43170: 9871-11782 , PASA_asmbl_43171: 9871-50195 , PASA_asmbl_43172: 9871-27662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004502_030 0.0 - - unknown [Populus trichocarpa]
2 Hb_000847_070 0.0645899199 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
3 Hb_007992_030 0.0675165859 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
4 Hb_001514_020 0.0733467821 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
5 Hb_004096_170 0.078643513 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
6 Hb_000345_560 0.0795183735 - - -
7 Hb_003633_130 0.080623587 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
8 Hb_001623_370 0.0820800064 - - conserved hypothetical protein [Ricinus communis]
9 Hb_119583_010 0.0843313347 - - 60S ribosomal protein L12A [Hevea brasiliensis]
10 Hb_007632_250 0.0850760396 - - conserved hypothetical protein [Ricinus communis]
11 Hb_143766_090 0.0853634452 - - 60S ribosomal protein L31B [Hevea brasiliensis]
12 Hb_006637_060 0.0881007342 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
13 Hb_007441_340 0.0895782778 - - protein with unknown function [Ricinus communis]
14 Hb_027892_060 0.0895960642 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
15 Hb_006501_150 0.0902455491 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000284_200 0.090450275 - - -
17 Hb_002681_140 0.0910072145 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
18 Hb_002997_170 0.0927139987 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
19 Hb_000172_120 0.0929386186 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
20 Hb_004374_010 0.0936762805 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004502_030 Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_004502_030--Hb_000847_070 Hb_007992_030 Hb_007992_030 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_007992_030--Hb_000345_560 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004096_170--Hb_004813_010 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_003055_050 Hb_003055_050 Hb_000345_560--Hb_003055_050 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_119583_010 Hb_119583_010 Hb_003633_130--Hb_119583_010 Hb_002942_070 Hb_002942_070 Hb_003633_130--Hb_002942_070 Hb_003633_130--Hb_007992_030 Hb_007632_250 Hb_007632_250 Hb_003633_130--Hb_007632_250 Hb_003633_130--Hb_000847_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75311 1.93245 2.03461 0.907845 10.0745 11.5683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44502 7.55851 3.37583 1.42883 0.907791

CAGE analysis