Hb_007441_340

Information

Type -
Description -
Location Contig7441: 212400-216217
Sequence    

Annotation

kegg
ID rcu:RCOM_0658840
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002526504.1
description protein with unknown function [Ricinus communis]
swissprot
ID O80501
description Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1
trembl
ID B9SKH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0658840 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabh1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56651: 212479-216202 , PASA_asmbl_56652: 212479-215606 , PASA_asmbl_56653: 212479-212939 , PASA_asmbl_56654: 212479-214505
cDNA
(Sanger)
(ID:Location)		 016_G09.ab1: 212480-215351

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_340 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000172_120 0.0377265606 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
3 Hb_004096_170 0.0608208426 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
4 Hb_003453_020 0.0727940989 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
5 Hb_002400_220 0.0733289201 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_001269_150 0.0750018482 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
7 Hb_000258_410 0.0832534591 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
8 Hb_008406_160 0.0853986041 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
9 Hb_003688_100 0.0864300016 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
10 Hb_004502_030 0.0895782778 - - unknown [Populus trichocarpa]
11 Hb_000265_150 0.0904996712 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_000176_110 0.0917449904 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
13 Hb_027892_060 0.092057233 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
14 Hb_001514_020 0.0931360053 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
15 Hb_011537_040 0.0963209583 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
16 Hb_002942_020 0.0964535519 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_000847_070 0.0968120303 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
18 Hb_004447_030 0.0969226786 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
19 Hb_002044_090 0.099582364 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
20 Hb_000905_190 0.1002272628 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]

Gene co-expression network

sample Hb_007441_340 Hb_007441_340 Hb_000172_120 Hb_000172_120 Hb_007441_340--Hb_000172_120 Hb_004096_170 Hb_004096_170 Hb_007441_340--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_007441_340--Hb_003453_020 Hb_002400_220 Hb_002400_220 Hb_007441_340--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_007441_340--Hb_001269_150 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_000172_120--Hb_004096_170 Hb_000172_120--Hb_003453_020 Hb_000172_120--Hb_001269_150 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_004096_170--Hb_003453_020 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_002400_220--Hb_001269_150 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_001493_100 Hb_001493_100 Hb_001269_150--Hb_001493_100 Hb_000732_260 Hb_000732_260 Hb_001269_150--Hb_000732_260 Hb_001269_150--Hb_004813_010 Hb_008406_160 Hb_008406_160 Hb_000258_410--Hb_008406_160 Hb_000997_060 Hb_000997_060 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_005271_070 Hb_005271_070 Hb_000258_410--Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_000258_410--Hb_011537_040 Hb_000258_410--Hb_000176_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.0673 13.7116 17.8877 14.4696 78.8771 70.9196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.2716 44.8049 26.1766 13.7557 4.7607

CAGE analysis