Hb_000345_560

Information

Type -
Description -
Location Contig345: 451724-452903
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36045: 420030-453997 , PASA_asmbl_36046: 420745-453997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_560 0.0 - - -
2 Hb_007992_030 0.0699011207 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
3 Hb_004502_030 0.0795183735 - - unknown [Populus trichocarpa]
4 Hb_000847_070 0.0836097508 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
5 Hb_002997_170 0.089737607 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
6 Hb_003055_050 0.0934932236 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
7 Hb_168918_020 0.0935250123 - - pectin acetylesterase, putative [Ricinus communis]
8 Hb_000329_690 0.0945761899 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
9 Hb_033080_010 0.0959540341 - - -
10 Hb_004813_010 0.0975574713 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_006261_040 0.0976655664 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
12 Hb_002955_030 0.0991564097 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000084_310 0.0995938643 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
14 Hb_002377_040 0.1023392214 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000172_120 0.1034542169 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
16 Hb_004096_170 0.1037031937 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
17 Hb_000933_140 0.1041175686 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
18 Hb_000284_200 0.1067205561 - - -
19 Hb_000365_360 0.1070210188 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_002681_140 0.1073870368 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_560 Hb_000345_560 Hb_007992_030 Hb_007992_030 Hb_000345_560--Hb_007992_030 Hb_004502_030 Hb_004502_030 Hb_000345_560--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_003055_050 Hb_003055_050 Hb_000345_560--Hb_003055_050 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_007992_030--Hb_004502_030 Hb_007992_030--Hb_000847_070 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_000905_190 Hb_000905_190 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_017098_030 Hb_017098_030 Hb_003055_050--Hb_017098_030 Hb_000085_340 Hb_000085_340 Hb_003055_050--Hb_000085_340 Hb_003055_050--Hb_007992_030 Hb_002955_030 Hb_002955_030 Hb_003055_050--Hb_002955_030 Hb_003055_050--Hb_001493_100 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_168918_020--Hb_000017_120 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.258 1.84867 3.21618 2.73175 22.8238 22.0696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7462 17.0958 9.61874 2.05931 2.30256

CAGE analysis