Hb_000977_130

Information

Type -
Description -
Location Contig977: 107312-110466
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18590g
description POPTRDRAFT_1091637; hypothetical protein
nr
ID XP_011009531.1
description PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
swissprot
ID O22823
description Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1
trembl
ID A9PAG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18590g PE=2 SV=1
Gene Ontology
ID GO:0005681
description u6 snrna-associated sm-like protein lsm6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64159: 107354-111333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_130 0.0 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
2 Hb_002997_170 0.0553784881 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
3 Hb_000690_080 0.0701323971 transcription factor TF Family: HB -
4 Hb_001741_140 0.0808943293 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_009767_120 0.0823340924 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
6 Hb_011794_090 0.0826969281 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
7 Hb_000107_050 0.0836178561 - - 60S ribosomal protein L9, putative [Ricinus communis]
8 Hb_000200_210 0.0842895632 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000905_190 0.085541529 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
10 Hb_012340_030 0.0885743504 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
11 Hb_004944_010 0.0896323781 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
12 Hb_118419_020 0.0919616286 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
13 Hb_003874_020 0.0932052428 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
14 Hb_010128_130 0.0947124902 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
15 Hb_148912_010 0.094724926 - - conserved hypothetical protein [Ricinus communis]
16 Hb_168918_020 0.0948541011 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_000500_130 0.0963891592 - - small GTPase [Hevea brasiliensis]
18 Hb_001754_150 0.0972795428 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
19 Hb_000270_840 0.0974859672 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
20 Hb_000165_030 0.0975268158 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_130 Hb_000977_130 Hb_002997_170 Hb_002997_170 Hb_000977_130--Hb_002997_170 Hb_000690_080 Hb_000690_080 Hb_000977_130--Hb_000690_080 Hb_001741_140 Hb_001741_140 Hb_000977_130--Hb_001741_140 Hb_009767_120 Hb_009767_120 Hb_000977_130--Hb_009767_120 Hb_011794_090 Hb_011794_090 Hb_000977_130--Hb_011794_090 Hb_000107_050 Hb_000107_050 Hb_000977_130--Hb_000107_050 Hb_000905_190 Hb_000905_190 Hb_002997_170--Hb_000905_190 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_004944_010 Hb_004944_010 Hb_000690_080--Hb_004944_010 Hb_000690_080--Hb_009767_120 Hb_000690_080--Hb_000107_050 Hb_141131_010 Hb_141131_010 Hb_000690_080--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_000690_080--Hb_003874_020 Hb_010128_130 Hb_010128_130 Hb_001741_140--Hb_010128_130 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_001741_140--Hb_000997_020 Hb_001741_140--Hb_000905_190 Hb_001741_140--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_009767_120--Hb_003874_020 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_003688_100 Hb_003688_100 Hb_011794_090--Hb_003688_100 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_002272_250 Hb_002272_250 Hb_011794_090--Hb_002272_250 Hb_011794_090--Hb_000107_050 Hb_004722_060 Hb_004722_060 Hb_011794_090--Hb_004722_060 Hb_000107_050--Hb_000933_180 Hb_000107_050--Hb_010128_130 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
504.213 62.7819 175.001 122.141 394.128 559.139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
382.446 463.37 237.872 94.6221 52.941

CAGE analysis