Hb_004722_060

Information

Type -
Description -
Location Contig4722: 82248-93823
Sequence    

Annotation

kegg
ID rcu:RCOM_0854770
description cleavage/polyadenylation factor ia subunit clp1p, putative
nr
ID XP_012082871.1
description PREDICTED: protein CLP1 homolog [Jatropha curcas]
swissprot
ID Q9SR06
description Protein CLP1 homolog OS=Arabidopsis thaliana GN=CLPS3 PE=1 SV=1
trembl
ID A0A067LAH8
description Protein CLP1 homolog OS=Jatropha curcas GN=JCGZ_09720 PE=3 SV=1
Gene Ontology
ID GO:0005849
description protein clp1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44316: 82279-93674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004722_060 0.0 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
2 Hb_019962_030 0.0704229925 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
3 Hb_003688_100 0.0709952246 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
4 Hb_000265_150 0.0721207003 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
5 Hb_000538_020 0.0736744795 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
6 Hb_002495_070 0.074004928 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
7 Hb_000621_080 0.0763673972 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010449_020 0.0777569947 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
9 Hb_005527_050 0.0792884875 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
10 Hb_005489_130 0.0794745484 - - calmodulin, putative [Ricinus communis]
11 Hb_000768_050 0.080302737 - - hypothetical protein RCOM_0845740 [Ricinus communis]
12 Hb_000666_110 0.0810588595 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
13 Hb_011794_090 0.0819858962 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
14 Hb_026198_050 0.0832608872 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
15 Hb_002272_250 0.0833893876 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_004109_200 0.083589644 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
17 Hb_000392_270 0.0862096391 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
18 Hb_011537_010 0.0885848441 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
19 Hb_002762_060 0.0892327481 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
20 Hb_000107_390 0.0906322462 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]

Gene co-expression network

sample Hb_004722_060 Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_005489_130 Hb_005489_130 Hb_003688_100--Hb_005489_130 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_000529_080 Hb_000529_080 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000538_020--Hb_000666_110 Hb_000270_840 Hb_000270_840 Hb_000538_020--Hb_000270_840 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_002495_070--Hb_000621_080 Hb_002495_070--Hb_000768_050 Hb_002495_070--Hb_005489_130 Hb_002150_080 Hb_002150_080 Hb_002495_070--Hb_002150_080 Hb_002495_070--Hb_010449_020 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_000621_080--Hb_002150_080 Hb_086639_070 Hb_086639_070 Hb_000621_080--Hb_086639_070 Hb_001610_110 Hb_001610_110 Hb_000621_080--Hb_001610_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.53 76.7189 55.8957 34.9696 164.939 132.628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
158.137 139.231 93.531 40.6157 14.3118

CAGE analysis