Hb_000265_150

Information

Type -
Description -
Location Contig265: 181117-187261
Sequence    

Annotation

kegg
ID rcu:RCOM_1211500
description hypothetical protein
nr
ID XP_012084082.1
description PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27700: 181188-187221 , PASA_asmbl_27701: 181247-186977 , PASA_asmbl_27704: 184686-185131 , PASA_asmbl_27705: 184445-184545 , PASA_asmbl_27706: 186343-186730
cDNA
(Sanger)
(ID:Location)		 015_F13.ab1: 181247-186977 , 016_H21.ab1: 181266-187026 , 017_H22.ab1: 181266-187081 , 018_B14.ab1: 181241-187027 , 020_G16.ab1: 181266-187075 , 027_M11.ab1: 181188-186927 , 033_K23.ab1: 181241-186887 , 043_M03.ab1: 181241-186983

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_150 0.0 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
2 Hb_000205_120 0.0710021977 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
3 Hb_012305_070 0.0716318908 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004722_060 0.0721207003 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
5 Hb_000529_080 0.0768944175 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
6 Hb_000768_050 0.0791060765 - - hypothetical protein RCOM_0845740 [Ricinus communis]
7 Hb_008406_160 0.0841469193 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
8 Hb_003453_020 0.0847162416 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
9 Hb_003688_100 0.0849350078 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
10 Hb_001158_040 0.0864343535 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
11 Hb_019962_030 0.0867367657 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
12 Hb_004447_030 0.0867715695 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
13 Hb_001014_010 0.0868861449 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
14 Hb_005489_130 0.0874774988 - - calmodulin, putative [Ricinus communis]
15 Hb_000116_110 0.0875181281 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
16 Hb_008725_250 0.0876916877 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000976_270 0.0877260881 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
18 Hb_000808_040 0.0883968575 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
19 Hb_005527_050 0.0885180678 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
20 Hb_002475_160 0.0899402051 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]

Gene co-expression network

sample Hb_000265_150 Hb_000265_150 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000529_080 Hb_000529_080 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_000205_120--Hb_000529_080 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000529_080--Hb_008887_050 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010 Hb_010449_020 Hb_010449_020 Hb_000768_050--Hb_010449_020 Hb_000768_050--Hb_002495_070 Hb_003106_070 Hb_003106_070 Hb_000768_050--Hb_003106_070 Hb_000768_050--Hb_003688_100 Hb_000768_050--Hb_004722_060 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
334.877 108.474 78.0247 65.068 282.108 249.817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
261.241 183.211 106.089 62.8046 41.2706

CAGE analysis