Hb_003106_070

Information

Type -
Description -
Location Contig3106: 42507-44031
Sequence    

Annotation

kegg
ID sly:101261386
description uncharacterized LOC101261386
nr
ID XP_011085792.1
description PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID K4B790
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g067580.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32871: 41469-41916 , PASA_asmbl_32872: 42590-44006
cDNA
(Sanger)
(ID:Location)		 015_L15.ab1: 42645-43995 , 027_K11.ab1: 42590-43974 , 031_G17.ab1: 42588-43978 , 035_E05.ab1: 42647-43995 , 039_K10.ab1: 42663-43979 , 042_C21.ab1: 42645-43833 , 048_E15.ab1: 42653-43975

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_070 0.0 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
2 Hb_000768_050 0.0775698638 - - hypothetical protein RCOM_0845740 [Ricinus communis]
3 Hb_010883_210 0.0931292856 - - PREDICTED: selenoprotein K [Jatropha curcas]
4 Hb_004920_040 0.0952683001 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
5 Hb_002495_070 0.0978640724 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
6 Hb_010449_020 0.101880532 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
7 Hb_003185_020 0.1054160197 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
8 Hb_000638_080 0.1077574723 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
9 Hb_012052_060 0.1079630756 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
10 Hb_000085_270 0.1103992021 - - PREDICTED: pirin-like protein [Malus domestica]
11 Hb_007919_060 0.1106621328 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
12 Hb_004221_010 0.1126183945 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
13 Hb_002762_060 0.1162184672 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
14 Hb_004012_010 0.1167838112 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
15 Hb_003994_180 0.1181033019 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
16 Hb_006775_080 0.1200866437 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
17 Hb_004055_010 0.1227033918 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_009615_150 0.1249739868 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
19 Hb_003688_100 0.1255392936 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
20 Hb_000272_100 0.1257659895 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_003106_070 Hb_003106_070 Hb_000768_050 Hb_000768_050 Hb_003106_070--Hb_000768_050 Hb_010883_210 Hb_010883_210 Hb_003106_070--Hb_010883_210 Hb_004920_040 Hb_004920_040 Hb_003106_070--Hb_004920_040 Hb_002495_070 Hb_002495_070 Hb_003106_070--Hb_002495_070 Hb_010449_020 Hb_010449_020 Hb_003106_070--Hb_010449_020 Hb_003185_020 Hb_003185_020 Hb_003106_070--Hb_003185_020 Hb_000768_050--Hb_010449_020 Hb_000768_050--Hb_002495_070 Hb_000265_150 Hb_000265_150 Hb_000768_050--Hb_000265_150 Hb_003688_100 Hb_003688_100 Hb_000768_050--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_000768_050--Hb_004722_060 Hb_010883_210--Hb_000768_050 Hb_010883_210--Hb_003688_100 Hb_010883_210--Hb_010449_020 Hb_002918_280 Hb_002918_280 Hb_010883_210--Hb_002918_280 Hb_005489_130 Hb_005489_130 Hb_010883_210--Hb_005489_130 Hb_002762_060 Hb_002762_060 Hb_004920_040--Hb_002762_060 Hb_024835_030 Hb_024835_030 Hb_004920_040--Hb_024835_030 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004012_010 Hb_004012_010 Hb_004920_040--Hb_004012_010 Hb_006775_080 Hb_006775_080 Hb_004920_040--Hb_006775_080 Hb_004221_010 Hb_004221_010 Hb_004920_040--Hb_004221_010 Hb_002495_070--Hb_004722_060 Hb_000621_080 Hb_000621_080 Hb_002495_070--Hb_000621_080 Hb_002495_070--Hb_005489_130 Hb_002150_080 Hb_002150_080 Hb_002495_070--Hb_002150_080 Hb_002495_070--Hb_010449_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_010449_020--Hb_003688_100 Hb_010449_020--Hb_005489_130 Hb_010449_020--Hb_004722_060 Hb_003185_020--Hb_004012_010 Hb_157854_010 Hb_157854_010 Hb_003185_020--Hb_157854_010 Hb_003185_020--Hb_002762_060 Hb_003185_020--Hb_000392_270 Hb_003185_020--Hb_004722_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2284.98 884.843 322.154 368.08 1281.69 1145.84
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2253.74 1570.63 598.082 802.918 158.153

CAGE analysis