Hb_004920_040

Information

Type -
Description -
Location Contig4920: 28688-33614
Sequence    

Annotation

kegg
ID rcu:RCOM_0353310
description dimethyladenosine transferase, putative (EC:2.1.1.48)
nr
ID XP_012082884.1
description PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
swissprot
ID Q9VAQ5
description Probable dimethyladenosine transferase OS=Drosophila melanogaster GN=CG11837 PE=2 SV=1
trembl
ID A0A067JWM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14023 PE=4 SV=1
Gene Ontology
ID GO:0000179
description probable dimethyladenosine transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45332: 28489-30384
cDNA
(Sanger)
(ID:Location)		 039_K17.ab1: 28489-30384 , 043_G08.ab1: 28489-30384

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_040 0.0 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
2 Hb_002762_060 0.0662185406 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
3 Hb_024835_030 0.0679901256 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
4 Hb_001138_050 0.0699727979 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
5 Hb_004012_010 0.0732617664 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
6 Hb_006775_080 0.0751245878 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
7 Hb_004221_010 0.0811819483 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
8 Hb_019253_020 0.0837050321 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
9 Hb_000720_120 0.0840208722 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
10 Hb_026198_050 0.0844402852 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
11 Hb_000877_060 0.0848871535 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
12 Hb_000056_340 0.0866069607 - - 60S ribosomal protein L34A [Hevea brasiliensis]
13 Hb_001248_050 0.0878544577 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
14 Hb_005357_030 0.09211861 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
15 Hb_000483_350 0.0929949774 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
16 Hb_009615_150 0.0934941238 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
17 Hb_002150_080 0.0940043975 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
18 Hb_002495_070 0.0946195767 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
19 Hb_003106_070 0.0952683001 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
20 Hb_000638_080 0.0967635156 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]

Gene co-expression network

sample Hb_004920_040 Hb_004920_040 Hb_002762_060 Hb_002762_060 Hb_004920_040--Hb_002762_060 Hb_024835_030 Hb_024835_030 Hb_004920_040--Hb_024835_030 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004012_010 Hb_004012_010 Hb_004920_040--Hb_004012_010 Hb_006775_080 Hb_006775_080 Hb_004920_040--Hb_006775_080 Hb_004221_010 Hb_004221_010 Hb_004920_040--Hb_004221_010 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_002762_060--Hb_024835_030 Hb_002762_060--Hb_004221_010 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_024835_030--Hb_004012_010 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_022250_040 Hb_022250_040 Hb_024835_030--Hb_022250_040 Hb_000056_340 Hb_000056_340 Hb_024835_030--Hb_000056_340 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_001138_050--Hb_000720_120 Hb_001377_290 Hb_001377_290 Hb_001138_050--Hb_001377_290 Hb_005357_030 Hb_005357_030 Hb_001138_050--Hb_005357_030 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_019253_020 Hb_019253_020 Hb_001138_050--Hb_019253_020 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_004012_010--Hb_006775_080 Hb_003185_020 Hb_003185_020 Hb_004012_010--Hb_003185_020 Hb_004012_010--Hb_002762_060 Hb_006775_080--Hb_000056_340 Hb_006824_020 Hb_006824_020 Hb_006775_080--Hb_006824_020 Hb_006775_080--Hb_024835_030 Hb_021068_050 Hb_021068_050 Hb_006775_080--Hb_021068_050 Hb_004221_010--Hb_158092_070 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.7751 27.2 7.3176 10.5757 36.8329 37.8676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.9914 58.3312 31.0116 21.7077 7.45706

CAGE analysis