Hb_006824_020

Information

Type -
Description -
Location Contig6824: 59166-65083
Sequence    

Annotation

kegg
ID rcu:RCOM_0810450
description Thioredoxin domain-containing protein, putative
nr
ID XP_012093074.1
description PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
swissprot
ID O64628
description Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1
trembl
ID A0A067LJI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16287 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin domain-containing protein 9 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53873: 59227-65033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006824_020 0.0 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
2 Hb_006775_080 0.081187515 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
3 Hb_001767_100 0.0849752462 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
4 Hb_000732_260 0.0857900942 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
5 Hb_021068_050 0.0892285633 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
6 Hb_000676_220 0.0910439287 - - ADP-ribosylation factor, putative [Ricinus communis]
7 Hb_006569_020 0.0918890937 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
8 Hb_004607_140 0.0923893642 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
9 Hb_001951_110 0.0956302242 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
10 Hb_001439_120 0.0961108391 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000282_060 0.0961990079 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
12 Hb_002007_310 0.0963584608 - - cyclin family protein [Populus trichocarpa]
13 Hb_000085_310 0.0978128759 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
14 Hb_034299_060 0.0984052371 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
15 Hb_000272_100 0.0998929168 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
16 Hb_004204_030 0.1031650955 - - unknown [Populus trichocarpa]
17 Hb_001804_040 0.1051404175 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000418_180 0.1059339997 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000866_300 0.1061183235 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
20 Hb_000809_040 0.1063011032 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]

Gene co-expression network

sample Hb_006824_020 Hb_006824_020 Hb_006775_080 Hb_006775_080 Hb_006824_020--Hb_006775_080 Hb_001767_100 Hb_001767_100 Hb_006824_020--Hb_001767_100 Hb_000732_260 Hb_000732_260 Hb_006824_020--Hb_000732_260 Hb_021068_050 Hb_021068_050 Hb_006824_020--Hb_021068_050 Hb_000676_220 Hb_000676_220 Hb_006824_020--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_006824_020--Hb_006569_020 Hb_004012_010 Hb_004012_010 Hb_006775_080--Hb_004012_010 Hb_004920_040 Hb_004920_040 Hb_006775_080--Hb_004920_040 Hb_000056_340 Hb_000056_340 Hb_006775_080--Hb_000056_340 Hb_024835_030 Hb_024835_030 Hb_006775_080--Hb_024835_030 Hb_006775_080--Hb_021068_050 Hb_002249_140 Hb_002249_140 Hb_001767_100--Hb_002249_140 Hb_157854_010 Hb_157854_010 Hb_001767_100--Hb_157854_010 Hb_001767_100--Hb_000732_260 Hb_001767_100--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_001767_100--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_000732_260--Hb_002249_140 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050 Hb_000412_110 Hb_000412_110 Hb_000676_220--Hb_000412_110 Hb_000418_180 Hb_000418_180 Hb_000676_220--Hb_000418_180 Hb_004223_130 Hb_004223_130 Hb_000676_220--Hb_004223_130 Hb_000107_390 Hb_000107_390 Hb_000676_220--Hb_000107_390 Hb_001671_080 Hb_001671_080 Hb_000676_220--Hb_001671_080 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
299.321 63.0659 35.4787 46.9215 307.317 167.16
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
363.443 248.935 216.133 73.1446 26.3632

CAGE analysis