Hb_002249_140

Information

Type -
Description -
Location Contig2249: 142651-150726
Sequence    

Annotation

kegg
ID rcu:RCOM_1503520
description nucleotide binding protein, putative
nr
ID XP_012090579.1
description PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
swissprot
ID Q8YRI1
description Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1
trembl
ID A0A067JSM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23410: 142869-144106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_140 0.0 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
2 Hb_000771_110 0.0673334314 - - protein phosphatase 2C [Hevea brasiliensis]
3 Hb_008725_250 0.0693068947 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_000732_260 0.0698416228 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
5 Hb_002044_090 0.0713165686 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_000481_010 0.0724731126 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
7 Hb_000784_090 0.0739436782 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
8 Hb_005527_050 0.0763365664 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
9 Hb_033491_010 0.0784967977 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
10 Hb_003728_020 0.0787269389 - - conserved hypothetical protein [Ricinus communis]
11 Hb_150069_020 0.0831306083 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
12 Hb_000340_510 0.0836443262 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
13 Hb_005754_020 0.0841310295 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
14 Hb_004096_170 0.0843295004 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
15 Hb_005147_110 0.0843368955 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
16 Hb_002377_050 0.0871773808 - - Agmatine deiminase, putative [Ricinus communis]
17 Hb_001811_150 0.0872574289 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
18 Hb_005914_230 0.0896184689 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
19 Hb_000733_060 0.0902812669 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
20 Hb_004310_060 0.0910761038 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_140 Hb_002249_140 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_000732_260 Hb_000732_260 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090 Hb_000107_390 Hb_000107_390 Hb_000771_110--Hb_000107_390 Hb_001001_160 Hb_001001_160 Hb_000771_110--Hb_001001_160 Hb_000001_020 Hb_000001_020 Hb_000771_110--Hb_000001_020 Hb_000771_110--Hb_000481_010 Hb_000025_200 Hb_000025_200 Hb_000771_110--Hb_000025_200 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_033491_010 Hb_033491_010 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_000062_230 Hb_000062_230 Hb_002044_090--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002044_090--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_003352_050 Hb_003352_050 Hb_002044_090--Hb_003352_050 Hb_000340_510 Hb_000340_510 Hb_000481_010--Hb_000340_510 Hb_000481_010--Hb_000784_090 Hb_002026_110 Hb_002026_110 Hb_000481_010--Hb_002026_110 Hb_002818_040 Hb_002818_040 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_000784_090--Hb_033491_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_001493_100 Hb_001493_100 Hb_000784_090--Hb_001493_100 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.1953 11.912 5.63864 4.88266 40.352 31.0903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.3757 20.5561 23.8659 10.1227 3.30291

CAGE analysis