Hb_001001_160

Information

Type -
Description -
Location Contig1001: 195656-206492
Sequence    

Annotation

kegg
ID tcc:TCM_033865
description Phosphatidic acid phosphohydrolase 2 isoform 1
nr
ID XP_007017270.1
description Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
swissprot
ID Q9FMN2
description Phosphatidate phosphatase PAH2 OS=Arabidopsis thaliana GN=PAH2 PE=1 SV=1
trembl
ID A0A061FAW9
description Phosphatidic acid phosphohydrolase 2 isoform 1 OS=Theobroma cacao GN=TCM_033865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00233: 195807-196000 , PASA_asmbl_00237: 197178-199383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_160 0.0 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
2 Hb_000025_200 0.0741860815 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
3 Hb_010174_130 0.0805359028 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
4 Hb_000733_060 0.0808774689 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
5 Hb_000771_110 0.0824320256 - - protein phosphatase 2C [Hevea brasiliensis]
6 Hb_000001_020 0.0867475144 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
7 Hb_002377_040 0.0943616845 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_002631_050 0.0971184974 - - membrane associated ring finger 1,8, putative [Ricinus communis]
9 Hb_007908_020 0.0994865899 - - zinc finger family protein [Populus trichocarpa]
10 Hb_003404_030 0.1001369008 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_002249_140 0.1004447589 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
12 Hb_022256_040 0.1004979249 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
13 Hb_003609_040 0.1029310983 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
14 Hb_005754_020 0.1045173382 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
15 Hb_000984_180 0.1048809387 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
16 Hb_002973_080 0.1055926376 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
17 Hb_000017_120 0.1063292916 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
18 Hb_000481_010 0.1071629269 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
19 Hb_002007_310 0.108249913 - - cyclin family protein [Populus trichocarpa]
20 Hb_000057_060 0.1089815987 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_160 Hb_001001_160 Hb_000025_200 Hb_000025_200 Hb_001001_160--Hb_000025_200 Hb_010174_130 Hb_010174_130 Hb_001001_160--Hb_010174_130 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_000771_110 Hb_000771_110 Hb_001001_160--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040 Hb_000025_200--Hb_000001_020 Hb_007908_020 Hb_007908_020 Hb_000025_200--Hb_007908_020 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_000029_030 Hb_000029_030 Hb_010174_130--Hb_000029_030 Hb_010174_130--Hb_000025_200 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_002249_140 Hb_002249_140 Hb_000771_110--Hb_002249_140 Hb_000107_390 Hb_000107_390 Hb_000771_110--Hb_000107_390 Hb_000771_110--Hb_000001_020 Hb_000481_010 Hb_000481_010 Hb_000771_110--Hb_000481_010 Hb_000771_110--Hb_000025_200 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_000062_230 Hb_000062_230 Hb_002377_040--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002377_040--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_002377_040--Hb_002044_090 Hb_003352_050 Hb_003352_050 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.2185 7.09079 7.58315 6.56898 47.5476 34.2724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.376 16.732 37.9573 7.0161 5.68281

CAGE analysis