Hb_000085_340

Information

Type -
Description -
Location Contig85: 298771-301478
Sequence    

Annotation

kegg
ID rcu:RCOM_0046330
description carboxy-lyase, putative
nr
ID XP_012070939.1
description PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L420
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00972 PE=4 SV=1
Gene Ontology
ID GO:0016829
description lysine decarboxylase family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60377: 298650-300507 , PASA_asmbl_60378: 300409-301404
cDNA
(Sanger)
(ID:Location)		 019_J10r.ab1: 294717-298025

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_340 0.0 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
2 Hb_002067_160 0.063993735 - - Protein MLO, putative [Ricinus communis]
3 Hb_005754_020 0.078977068 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
4 Hb_002391_110 0.0790399895 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
5 Hb_002377_040 0.0791214814 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_026048_090 0.080786492 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000176_140 0.0851446981 - - PREDICTED: bystin [Jatropha curcas]
8 Hb_094437_070 0.0851827303 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
9 Hb_004738_090 0.0870261871 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003352_050 0.0900409837 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
11 Hb_127979_010 0.0902063868 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
12 Hb_000062_230 0.0902147111 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
13 Hb_000028_470 0.0903942985 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_005488_100 0.0959531524 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
15 Hb_001493_100 0.0960993216 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
16 Hb_000179_250 0.0965429751 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
17 Hb_003055_050 0.0966297462 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
18 Hb_019654_070 0.0974713328 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
19 Hb_011316_030 0.1003142702 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
20 Hb_002044_090 0.1014562687 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_340 Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_005488_100 Hb_005488_100 Hb_002067_160--Hb_005488_100 Hb_004738_090 Hb_004738_090 Hb_002067_160--Hb_004738_090 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_002067_160--Hb_026048_090 Hb_002232_180 Hb_002232_180 Hb_002067_160--Hb_002232_180 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_005754_020--Hb_002377_040 Hb_000028_470 Hb_000028_470 Hb_005754_020--Hb_000028_470 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_005754_020--Hb_000176_140 Hb_000599_120 Hb_000599_120 Hb_002391_110--Hb_000599_120 Hb_002681_140 Hb_002681_140 Hb_002391_110--Hb_002681_140 Hb_127979_010 Hb_127979_010 Hb_002391_110--Hb_127979_010 Hb_002391_110--Hb_026048_090 Hb_002391_110--Hb_000176_140 Hb_002377_040--Hb_000062_230 Hb_002377_040--Hb_002044_090 Hb_002377_040--Hb_003352_050 Hb_002377_040--Hb_000028_470 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_000176_140--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_000176_140--Hb_002681_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.432 5.36718 6.55163 9.64636 72.7074 91.3635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.1234 34.7546 42.1479 10.8767 4.85726

CAGE analysis