Hb_000599_120

Information

Type -
Description -
Location Contig599: 77642-83407
Sequence    

Annotation

kegg
ID vvi:100247153
description putative E3 ubiquitin-protein ligase XBAT34
nr
ID XP_012085305.1
description PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
swissprot
ID Q7XI08
description Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1
trembl
ID A0A067JUL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17681 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase xbat34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50449: 76479-76962 , PASA_asmbl_50450: 77724-83398
cDNA
(Sanger)
(ID:Location)		 052_D10.ab1: 77726-80274

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_120 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
2 Hb_002391_110 0.0644135504 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
3 Hb_000057_060 0.0767505621 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
4 Hb_000984_180 0.0776420356 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
5 Hb_000365_360 0.078316719 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_000696_110 0.0792468435 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_127979_010 0.0844645743 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
8 Hb_001433_170 0.0877952585 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
9 Hb_002014_080 0.0888341808 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
10 Hb_000077_050 0.0909765984 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001135_160 0.0923774919 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
12 Hb_010261_020 0.0938598404 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
13 Hb_003352_050 0.0954169415 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
14 Hb_162275_010 0.0980057965 - - -
15 Hb_014568_030 0.0981711444 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_002681_140 0.0994178772 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
17 Hb_002631_050 0.0994766136 - - membrane associated ring finger 1,8, putative [Ricinus communis]
18 Hb_005288_120 0.1001860735 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
19 Hb_098709_010 0.1033829162 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
20 Hb_035524_030 0.103527788 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000599_120 Hb_000599_120 Hb_002391_110 Hb_002391_110 Hb_000599_120--Hb_002391_110 Hb_000057_060 Hb_000057_060 Hb_000599_120--Hb_000057_060 Hb_000984_180 Hb_000984_180 Hb_000599_120--Hb_000984_180 Hb_000365_360 Hb_000365_360 Hb_000599_120--Hb_000365_360 Hb_000696_110 Hb_000696_110 Hb_000599_120--Hb_000696_110 Hb_127979_010 Hb_127979_010 Hb_000599_120--Hb_127979_010 Hb_002681_140 Hb_002681_140 Hb_002391_110--Hb_002681_140 Hb_002391_110--Hb_127979_010 Hb_000085_340 Hb_000085_340 Hb_002391_110--Hb_000085_340 Hb_026048_090 Hb_026048_090 Hb_002391_110--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_002391_110--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_000078_130 Hb_000078_130 Hb_000984_180--Hb_000078_130 Hb_000984_180--Hb_000057_060 Hb_001416_040 Hb_001416_040 Hb_000984_180--Hb_001416_040 Hb_000984_180--Hb_001433_170 Hb_005288_120 Hb_005288_120 Hb_000984_180--Hb_005288_120 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000696_110--Hb_000057_060 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_127979_010--Hb_000176_140 Hb_127979_010--Hb_001433_170 Hb_127979_010--Hb_026048_090 Hb_127979_010--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7244 4.20826 2.9788 4.46492 45.0527 51.1547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3974 21.2517 29.1935 13.6207 6.85433

CAGE analysis